Gene Caci_1606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1606 
Symbol 
ID8332949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1823114 
End bp1823938 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content68% 
IMG OID644954756 
ProductAlginate lyase 2 
Protein accessionYP_003112368 
Protein GI256390804 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.139119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.151509 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAGAG GCGCATCACC CAAGCTCGTC GCCGCGGCCA CCGCGGCCAC CGTGGTCCTC 
ACCGGCGCCG TGATCGCCGC GTCGTCGACG GCCGCCCAGG CCGCCCCGGC CGTGACCCGG
GCCGCCGCCC CCAAGCTCAG CACCACCGTC GCGCCGGGCG GCAACTTCAA CCTGTCCGTC
TGGGAGCTCC AGGAGCCCGT GGGCAGCCCC GGCTCGCCCC GCACGATCCC CTCCGCGCAG
CTGCAGGGCG CCAAGGGGTA TCAGGACTCG TACTTCTACA CCGACACCAA AGACGGCGCC
ATGACCTTCT GGGCGCCGGA GAAGGGCGTC ACCACGCCCA ACTCCAACTA CGCCCGCTCC
GAGCTGCGCG AGATGAACAC CGACGGCAGC TCCGCGGACT GGAAGCTGGC CGGCTCCCAC
CAACTGCAGG CCACCTTGCG CGTGGACTCG GTGACCGACC ACGTCTGCGT GGGCCAGATC
CACCTGGGCA CCGGCGGCTC CTCCACCAAG CCGCTCGTCG AGCTGTACTA CTACAAGAAC
GGCAACATCG TGCTCGGCGA GGAGAACTCG CCCTCCGGCG GCCAGACGAC GCACCAGATC
GCCAACGTCC CGGTCGGCAC GCAGTGGAGC TACACCATCG CCGTCTCCGG CGGGAACACC
ATCAACCTGA CGGTGAACGG CAAGACCACG AAGTACGCGA TCCCGTCGTC CTTCAACGCC
TACCACATGT ACTTCAAGGC CGGTTCCTAC AACCAGTCCT CGTCGAGCAG CACCACGAAG
GGGGCGCGCG TCGCCTTCTA CGCGCTGACC GTGAAGCACA GCTGA
 
Protein sequence
MLRGASPKLV AAATAATVVL TGAVIAASST AAQAAPAVTR AAAPKLSTTV APGGNFNLSV 
WELQEPVGSP GSPRTIPSAQ LQGAKGYQDS YFYTDTKDGA MTFWAPEKGV TTPNSNYARS
ELREMNTDGS SADWKLAGSH QLQATLRVDS VTDHVCVGQI HLGTGGSSTK PLVELYYYKN
GNIVLGEENS PSGGQTTHQI ANVPVGTQWS YTIAVSGGNT INLTVNGKTT KYAIPSSFNA
YHMYFKAGSY NQSSSSSTTK GARVAFYALT VKHS