| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1602 |
|---|
| Symbol | |
|---|
| ID | 8332945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1815709 |
|---|
| End bp | 1816725 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644954752 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_003112364 |
|---|
| Protein GI | 256390800 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0824373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.23587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCGCCC GTCCGACCGT GCTGTTCGCG ATGACCCACG AGAACCTGCC CCGGCTGTTT
TCGCCGCGGG CGCTCGACCG GCTCCGGGAG CTGACCGAGA TCGACGCCTG CCTGGTCGTC
GACGATTTCC GCGGACCCGA CGCGGCCCGC GCCCTGGCCT CGACCGAGGT GCTGATCACC
AGCTGGGGCG CGCCGCCGAT CGATCAGCGC GTCCTGGACG CCGCCCCGCG CCTGCGCGCC
GTACTGCACG CGGCCGGGAC CGTGCGCGGC TACGTCACGG ACGCCTGCTG GGAGCGCGGA
CTGCTGGTCT CCTCGGCCGC CGAGGCCAAC GCGATCCCCG TCGCCGAGTA CACCCTCGCC
GCGATCCTGT TGGCCGGCAA GAACGCCTTC GCCCTCCGCG AGTCGTTCAC CGCACTTCGC
GGCGCCACCG ACCCTGACCG CGAGCGGCGC CGGGACACCC TCGGCAACCA CCACCGGCGG
GTCGGCGTCA TCGGCGCCTC GCGCGTCGGA CGGCGGCTCC TGGAGCTGCT GCGCCCCTTC
GACTTCGAGC TCTTCCTCAG CGACCCGTAC ATCGGCCCGA CCGAGGCGAC CGACCTCGGC
GCCGTCCTCC TCTCCCTGGA CGACCTGCTG CGCAGCAGCG ACATCGTGAC CCTGCACGCC
CCGGACCTCC CAGCGACGCG CGGCATGCTC GACCGCCGCC GCCTCGCACT GATCCCCGAC
GGCGCCACCG TGATCAACAC CTCCCGCGGC ACCCTCATCG AGCCCGAAGC CCTGACCGAC
GAACTACTCT CGGGCCGCCT CAACGCCATC CTCGACGTCA CCGACCCCGA GCCGCCGCCC
CCCGATTCCC CCTTGTACCG ATTGCCGAAC GTCTTCCTGA CCCCCCACAT CGCCGGCTCC
CTCGGCAACG AGCTGTCCCG CATCGGCGAC GCGGTGGTGC AGGAGGTCGA GCGGCTGGCG
GGCGGACGGC CGCTGGAGCA CCGGGTGGTG CGGGCGGATC TGGAGCGGGT GGCGTGA
|
|---|
| Protein sequence | MTARPTVLFA MTHENLPRLF SPRALDRLRE LTEIDACLVV DDFRGPDAAR ALASTEVLIT
SWGAPPIDQR VLDAAPRLRA VLHAAGTVRG YVTDACWERG LLVSSAAEAN AIPVAEYTLA
AILLAGKNAF ALRESFTALR GATDPDRERR RDTLGNHHRR VGVIGASRVG RRLLELLRPF
DFELFLSDPY IGPTEATDLG AVLLSLDDLL RSSDIVTLHA PDLPATRGML DRRRLALIPD
GATVINTSRG TLIEPEALTD ELLSGRLNAI LDVTDPEPPP PDSPLYRLPN VFLTPHIAGS
LGNELSRIGD AVVQEVERLA GGRPLEHRVV RADLERVA
|
|---|
| |