Gene Caci_1554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1554 
Symbol 
ID8332896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1757032 
End bp1758540 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content73% 
IMG OID644954703 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003112316 
Protein GI256390752 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.028716 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCCCGG TTGCCTCCGC CGAGGCGGGC AGCGTGCGGC TGGGCACGCC GATCGGCCGG 
GGCGTCCTGG CGACCACCAT CCTGGGGTCG GCGATGGCCT TCCTCGACGG CACGGTGGTC
AACATCGCGC TGCCGCGCAT CGGCAGCCAG TTCGGGGCGA CGCTGGCCGG GCTGCAGTGG
ACGGTCACCG GCTACACCCT CACCCTGGCC GCCTTCGTCC TGGTCGGCGG CTCGCTCGGG
GACCGCTTCG GCCGCCGCCG GGTGTTCCTG ATCGGCGTGG TCTGGTTCGC GCTGGCCTCG
CTGGCCTGCG GGCTGGCGCC GAGTCTGGGC TTCCTGATCG CCTTCCGCGC GATCCAGGGC
ATCGGCAGCG CGCTGCTGAC GCCCGGTGCG CTGGCGCTGA TCCAGTCGGT GTTCCACCCC
GACGACCGCG CCAAGGCCGT CGGCGCCTGG TCCGGGCTGG CCAGCATCGC CGGCGCGGCC
GGTCCGCTGG TCGGCGGCTA TCTCATCGAG TACGCCTCGT GGCGCTGGAT CTTCCTGGTC
AACCTGCCGC TGGCGGCCGC GGTCGTGGCG ATCGCGCTGC GCTACGTGCC GGAGTCCAAG
GAGCTGGTCG CGGGCCACTT CGACCTGCCC GGCGCCGTCC TCGGCGCGGT GGGTCTGGCC
GGGGTCACCT ACGCGCTGGT CGAGGCCGGC TCCAAGGGGC TGGGGTCGGC GAGCGTGATC
GTGACCGCGG TGCTCGGCGT CGCGGCGCTG GTGGCCTTCG TCCTGGTCGA GCGGCGCTCC
CCGGCGCCGA TGATGCCGCT GTCGCTGTTC AGCTCGCGGG AGTTCAGTGC GGCGAACGCC
CTGACGCTGA CCGCGTACGG GGCGCTCGGC GCGCTGTTCT TCTTCTTCGC GACGTACCTG
CAGGTGGTCG GCGGCTACTC GCCGCTGGAG GCGGGACTGG CCTCGCTGCC GACCACGGTC
GTGTTGATGA CGCTGTCCTC GCGGGTCGGC GGCCTCACCA CCAAGGTCGG CGCACGCCGC
CTGATCACCG CTGGCGGCGC GCTGACGGCG ATCGGCACGC TGATCCTGGC CACGTCCGGC
CACCACCCGG ACTATTTGAC TCACATCCTG CCCGGCCTGC TGGTGTTCTC CCTCGGCATG
GTGATGATCG CGGTCCCGGT GACCGTGACG GTGCTGAACT CCACCACCAC CGACCGCGCC
GGCATCGCCA GCGGCGTGAA CAACGCGGTG GCCCGCGCCG CCGGCGCCCT GGCCGTGGCG
GCGTTCCCGC TGCTGGTGGG ACTGAAGGGC GACGGCTACG CGAACCCGGC GAAGCTCGAG
CCGGCGTTCA CCAAGGCGAT GGTGCTGTCC GCGGCGCTGT TCGCGGTCTC CGGCGCCATC
GCCTGGTTCG GCATCCGCGA CGCGGCGACG CGCACGACGC CGGAGCACGA GGCGCAGGAG
CCGCAGTGCG CGACGTGCCT GCCGATAGGG AGCCCGCCGC TGGAGCCGGC CCAGGATCGG
GCCGGCTGA
 
Protein sequence
MSPVASAEAG SVRLGTPIGR GVLATTILGS AMAFLDGTVV NIALPRIGSQ FGATLAGLQW 
TVTGYTLTLA AFVLVGGSLG DRFGRRRVFL IGVVWFALAS LACGLAPSLG FLIAFRAIQG
IGSALLTPGA LALIQSVFHP DDRAKAVGAW SGLASIAGAA GPLVGGYLIE YASWRWIFLV
NLPLAAAVVA IALRYVPESK ELVAGHFDLP GAVLGAVGLA GVTYALVEAG SKGLGSASVI
VTAVLGVAAL VAFVLVERRS PAPMMPLSLF SSREFSAANA LTLTAYGALG ALFFFFATYL
QVVGGYSPLE AGLASLPTTV VLMTLSSRVG GLTTKVGARR LITAGGALTA IGTLILATSG
HHPDYLTHIL PGLLVFSLGM VMIAVPVTVT VLNSTTTDRA GIASGVNNAV ARAAGALAVA
AFPLLVGLKG DGYANPAKLE PAFTKAMVLS AALFAVSGAI AWFGIRDAAT RTTPEHEAQE
PQCATCLPIG SPPLEPAQDR AG