Gene Caci_1549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1549 
Symbol 
ID8332888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1749543 
End bp1750961 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content72% 
IMG OID644954695 
ProductFAD dependent oxidoreductase 
Protein accessionYP_003112311 
Protein GI256390747 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0684426 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGCGG TGAGTGCCGT GGACGCGGCG GGCACGATCG ACGGCGACCT TTCGCTGTGG 
CACGAGCAGG TGGCGGCGGC TGGTCCCGCG CCGAACCGTC CCACGCTGGC GGCTGATATC
GAGGCTGATA TCGCGATCGT CGGCGCGGGA TACACCGGTC TGTGGACCGC GTACTACCTC
GCCAAGGCCG ATCCGTCGCT GCGGGTCGTG GTGCTGGAGC GCGAGTTCGC GGGGTTCGGC
GCCTCGGGGC GTAACGGCGG CTGGTGCTCC TCGCTGTTCC CTTCCTCGTT GGCGAAGGTG
GCGAAGGTCG GCGGCGGGAA AGAGCGCGCG GTCGCCTTGC AGCGCGCGCT GAACGAGACC
GTCGACGAGG TCGGGCGTGT GGCCGCGGAG GAAAGGATCG ACTGCCATTT CGCCAAGGGC
GGCACGGTGG TTCTGGCCCG CACTCCGGTT CAGCTGGAAC GTGCGAAGGC CTCGGTCGCC
GATGAGCGGT CGTACGGTTT CGGCGAGGAG GATGTCAGGC TGCTGAGTGC GGCTGAAGCC
TCAGCGATGG TCGGCGCGAC GAACGTGCTC GGCGGCACGT TCACCCCGCA CTGCGCGGCG
ATCCAGCCGG CGATGCTCGC GCGCGGTCTG GCCGAGGCCG TCGACCGGCT CGGCGTCACG
ATCCACGAGC ACACAGCGGT CGCGGCGATC CATGACGGCG TGGTGCAGAC CGTGGGCGGA
GCGCGCGTCC GAGCCGGAAA GGTAGTGCGC GCGACCGAGG GTTACACGCC GTCGATCGCC
GGCTTCCAGC GCGATCTGGC GCCGGTCTAC TCGCTGATGG TCGCCACCGA ACCGCTGCCG
GACGCGGTCT GGGAGCAGAT CGGGCTGGCC GGGCGGCAGA CCTTCTCCGA CTTCCGCCAC
CTGATCGTCT ACGGTCAGCG CACCGCCGAC AGCCGGCTGG CGTTCGGCGG CCGCGGCGCG
CCGTACCACT TCGGCTCGCG GATCGAGGCC GGCTACGACC GGGACGACCG CGTGCACGCC
GAGATCCGCC GCACGCTGCG CGAGCTGTTC CCGGTGTTGA AGGACACTGC GTTCACGCAC
CGCTGGGGCG GGGCGCTGGG CGTCCCGCGC GACTGGTTCG CCTCGGTCGG CTACGACGCG
AGGCGGCGGC TGGGATGGGC CGGCGGCTAC GTCGGCGACG GCGTGGGCGC GACGAACCTG
GCCGGACGCA CGCTCGCGGA CCTGCTGACC GGCCGCGACT CCGCCCTGAC CCGGCTGCCG
TGGGTCAACC ACCACTCGCC GCGCTGGGAG CCGGAGCCGC TGCGCTGGCT CGGCGCGAAC
ATCGGCCTGC GGACGATGAG CGCGGCCGAC GCCGAGGAGG AGCGGACCGG GAAATCCTCG
GTGCGCGCAA AGGTTTTCGG GCGCTTCCTC GGGCACTGA
 
Protein sequence
MAAVSAVDAA GTIDGDLSLW HEQVAAAGPA PNRPTLAADI EADIAIVGAG YTGLWTAYYL 
AKADPSLRVV VLEREFAGFG ASGRNGGWCS SLFPSSLAKV AKVGGGKERA VALQRALNET
VDEVGRVAAE ERIDCHFAKG GTVVLARTPV QLERAKASVA DERSYGFGEE DVRLLSAAEA
SAMVGATNVL GGTFTPHCAA IQPAMLARGL AEAVDRLGVT IHEHTAVAAI HDGVVQTVGG
ARVRAGKVVR ATEGYTPSIA GFQRDLAPVY SLMVATEPLP DAVWEQIGLA GRQTFSDFRH
LIVYGQRTAD SRLAFGGRGA PYHFGSRIEA GYDRDDRVHA EIRRTLRELF PVLKDTAFTH
RWGGALGVPR DWFASVGYDA RRRLGWAGGY VGDGVGATNL AGRTLADLLT GRDSALTRLP
WVNHHSPRWE PEPLRWLGAN IGLRTMSAAD AEEERTGKSS VRAKVFGRFL GH