Gene Caci_1526 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1526 
Symbol 
ID8332865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1730898 
End bp1732133 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content67% 
IMG OID644954672 
ProductRNA polymerase, sigma 28 subunit, FliA/WhiG 
Protein accessionYP_003112288 
Protein GI256390724 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.597121 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0174426 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGTC CCACCCGCGG GCGTGAGGAC AGCGTCCTCG ACCAGGCGCA GCTCGCAGCG 
GCCCCCGGCG CCGCCGACGC GGCGTCGCAG GTCGCGGCTG CCCCGCGGCC GCGGGCCGGC
GGCCACGCCC CGGGCGAGCG CACGCCGTCG CACGACCTCG GTACCGCCAC CGGCACCCGC
ACCGCCGCCG TGCCGGCCCC GATCGACGGG AACCGGACCG TCGGTCACGA CAGCGAAGGC
GACCGCGCCA CGACCCAGGA ACCGCACACT GACAAACCAG CCGACAAGCA AGCCGACAAG
CAAGCCGATA CACCAACCGG CAAACCAACC GACAAGCAAG CCGATACACC AACCGGCAAA
CCAACCGACA AGCAAGCCGA TACACCAACC GGCAAACCAA CCGACAAGCA AGCCGATACA
CCAACCGGCA AACCAACCGA CAAGCAAGCC GACAAACCCA TCGACAAGCC CGCCCCCGAC
ACCGCCCTCG ACATCCTCTG GGACGACTTC AAGCGCACCG GCGACCTCGG ACTCCGCGAG
CGCCTGATCC TCCATTACTC CCCGCTGGTG AAGTACGTCG CCGGCCGCGT CCGCGTCGGG
TTGCCGGGGG CGTTGGACTC CGCCGACTTC GTCTCGTCGG GGATCTTCGG GCTCATCGAT
GCCATTGAGC GCTTCGAGCC GCATCGGCAT GTGAAGTTCG AGACGTACGC CATTGCTCGG
ATTCGTGGCG CCATCATTGA CGAGCTGCGG GCGCTGGACT GGATTCCGCG GTCGTTGCGG
CAGAAGGCTC GGGAGATCGA GCAGGCTTCG GTGCGGTTGG AGCAGGAGTT CGGGCGGACG
CCGAGTGAGT CGGAGATCGC GCGGGAGCTG GGGATCGGGC TGGGGGAGTT GCGGCAGATC
TTCAGCAAGC TGTCTTTGGT GAACGTCGCG GCGCTGGACG AGTTGTTGGC GCTGCCGACG
CAGTCCGGGG ACCGGATTCC GCTGATGGAG ACGTTGGAGG ATGGCGACGC GCCCGACCCC
GTGGCGCTCT TCGAGGTGCA GGAGACGCGG GCTTTGCTGG CGCGGGCGGT GAACTCGCTG
CCGGAGCGGG ACAAGACGGT GGTCACGCTG TATTACTTCG AGGGCATGAC GCTCGCGCAG
ATCGGCGAGG TGCTCGGGGT CAGTGAGAGC CGGGTATGCC AGATCCACAC CAAGGCCGTG
TTGACGTTGC GGGGCAAGTT GTCGGCCAAG GAGTGA
 
Protein sequence
MPSPTRGRED SVLDQAQLAA APGAADAASQ VAAAPRPRAG GHAPGERTPS HDLGTATGTR 
TAAVPAPIDG NRTVGHDSEG DRATTQEPHT DKPADKQADK QADTPTGKPT DKQADTPTGK
PTDKQADTPT GKPTDKQADT PTGKPTDKQA DKPIDKPAPD TALDILWDDF KRTGDLGLRE
RLILHYSPLV KYVAGRVRVG LPGALDSADF VSSGIFGLID AIERFEPHRH VKFETYAIAR
IRGAIIDELR ALDWIPRSLR QKAREIEQAS VRLEQEFGRT PSESEIAREL GIGLGELRQI
FSKLSLVNVA ALDELLALPT QSGDRIPLME TLEDGDAPDP VALFEVQETR ALLARAVNSL
PERDKTVVTL YYFEGMTLAQ IGEVLGVSES RVCQIHTKAV LTLRGKLSAK E