Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_1526 |
Symbol | |
ID | 8332865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 1730898 |
End bp | 1732133 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644954672 |
Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
Protein accession | YP_003112288 |
Protein GI | 256390724 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.597121 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0174426 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGTC CCACCCGCGG GCGTGAGGAC AGCGTCCTCG ACCAGGCGCA GCTCGCAGCG GCCCCCGGCG CCGCCGACGC GGCGTCGCAG GTCGCGGCTG CCCCGCGGCC GCGGGCCGGC GGCCACGCCC CGGGCGAGCG CACGCCGTCG CACGACCTCG GTACCGCCAC CGGCACCCGC ACCGCCGCCG TGCCGGCCCC GATCGACGGG AACCGGACCG TCGGTCACGA CAGCGAAGGC GACCGCGCCA CGACCCAGGA ACCGCACACT GACAAACCAG CCGACAAGCA AGCCGACAAG CAAGCCGATA CACCAACCGG CAAACCAACC GACAAGCAAG CCGATACACC AACCGGCAAA CCAACCGACA AGCAAGCCGA TACACCAACC GGCAAACCAA CCGACAAGCA AGCCGATACA CCAACCGGCA AACCAACCGA CAAGCAAGCC GACAAACCCA TCGACAAGCC CGCCCCCGAC ACCGCCCTCG ACATCCTCTG GGACGACTTC AAGCGCACCG GCGACCTCGG ACTCCGCGAG CGCCTGATCC TCCATTACTC CCCGCTGGTG AAGTACGTCG CCGGCCGCGT CCGCGTCGGG TTGCCGGGGG CGTTGGACTC CGCCGACTTC GTCTCGTCGG GGATCTTCGG GCTCATCGAT GCCATTGAGC GCTTCGAGCC GCATCGGCAT GTGAAGTTCG AGACGTACGC CATTGCTCGG ATTCGTGGCG CCATCATTGA CGAGCTGCGG GCGCTGGACT GGATTCCGCG GTCGTTGCGG CAGAAGGCTC GGGAGATCGA GCAGGCTTCG GTGCGGTTGG AGCAGGAGTT CGGGCGGACG CCGAGTGAGT CGGAGATCGC GCGGGAGCTG GGGATCGGGC TGGGGGAGTT GCGGCAGATC TTCAGCAAGC TGTCTTTGGT GAACGTCGCG GCGCTGGACG AGTTGTTGGC GCTGCCGACG CAGTCCGGGG ACCGGATTCC GCTGATGGAG ACGTTGGAGG ATGGCGACGC GCCCGACCCC GTGGCGCTCT TCGAGGTGCA GGAGACGCGG GCTTTGCTGG CGCGGGCGGT GAACTCGCTG CCGGAGCGGG ACAAGACGGT GGTCACGCTG TATTACTTCG AGGGCATGAC GCTCGCGCAG ATCGGCGAGG TGCTCGGGGT CAGTGAGAGC CGGGTATGCC AGATCCACAC CAAGGCCGTG TTGACGTTGC GGGGCAAGTT GTCGGCCAAG GAGTGA
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Protein sequence | MPSPTRGRED SVLDQAQLAA APGAADAASQ VAAAPRPRAG GHAPGERTPS HDLGTATGTR TAAVPAPIDG NRTVGHDSEG DRATTQEPHT DKPADKQADK QADTPTGKPT DKQADTPTGK PTDKQADTPT GKPTDKQADT PTGKPTDKQA DKPIDKPAPD TALDILWDDF KRTGDLGLRE RLILHYSPLV KYVAGRVRVG LPGALDSADF VSSGIFGLID AIERFEPHRH VKFETYAIAR IRGAIIDELR ALDWIPRSLR QKAREIEQAS VRLEQEFGRT PSESEIAREL GIGLGELRQI FSKLSLVNVA ALDELLALPT QSGDRIPLME TLEDGDAPDP VALFEVQETR ALLARAVNSL PERDKTVVTL YYFEGMTLAQ IGEVLGVSES RVCQIHTKAV LTLRGKLSAK E
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