| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1360 |
|---|
| Symbol | |
|---|
| ID | 8332698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 1548545 |
|---|
| End bp | 1549774 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644954508 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_003112124 |
|---|
| Protein GI | 256390560 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.694033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCG ACCCCGAACA GCAAGAACTC CGGCAGACGG TGCGGACGCT GCTGGACCGG
GCCGCCGGCG GCGACGTCTG GCGGCTGCTC ACCGAGCAGG TCGGAGCGCT CGAACTCGCC
ATCCCCGAGC AATACGGCGG CGCCGGCTTC TCAGTCCTGG AAACGCACGT CGTGCTCGAG
GAACTCGGCG CAGCGCTTGC CGCCCCCGGC TACTTGAGCA CGACGGTCGC GGCACAGGCG
ATTCTCGCGG GGGACTCGGA GCAGGCGAAG GCGGAACTGC TGCCGGGAAT CGCCGGGGGT
GGGACGCGAG CGGCGGTGGT TTGGAGTGGC ACGGTCGAGG CTGTGGTCGA GGCTGCGGTT
GGGGGCGGCG GCGATGGCTG GCGGCTGACC GGGATCGAGG AACATGTGCT GGACGGCGGG
GATTCGGGCT TGTTCGTAGC TCAAGCACGA ATGCCAGGGG CACGCGGCGA GGCGGCAGGT
AAGCCAGACA GCGGTCGCGC ACCGCGGCAA GAATCAGGCG CTGGGCGCGG GCAGGCGCGG
GCGGAAACTG GTCTCGGGCA GGCGCAGGAA TCAGCCACTG ATCGCGGGCA GGCGCGCGAG
GCTGCCATCG GTCGCGGACC GTGGCAATCA CTCGATGCGC ACTCGGTCTC GGGTTATGGC
GTCTTCGTGG TCTCTGCTGC GGATGCGGTG GTTTCTGCTG TCGAGACCGT CGATCCGGGT
CGGCCGCAGG CATGCGTCGA GTTCCGCGAC TCCCCTGCCA TCTTCCTCGG CGCCGATCCC
CTGCTGCTGG AGCGGGTGCT GGACTTGGCG TGTGTTGCGA TCTCGGCCGA GCAGGTCGGC
GCTGCGCAGC GTGCGTTTGA TCTGACCCTC GCCTATGCGA AGCAGCGGGT GCAGTTCGGG
CGGCCGATTG GTTCGTTTCA GGCTGTGAAG CACCGGCTCG CCGACATGTT CACGTTGCTG
GAGTCGGCGC GCTCGGCCTC CTATGCCGCT GCGTTCGCTG CTGTGTCAGG GAACGAGCTC
ACCGTCGCCG CGTCGCGGGC CAAGGCGTAC TGCTCCGAGG CGTTCTCCAC GATCGCGGGC
GAGGCGATTC AGCTGCACGG TGGCATCGGC ATCACCTGGG AGCACCCGAT TCATCTCTAC
TTCAAGCGCG CGCACGTCAC CTCGCAGCTG TTCGGCACTC CCGCTTGGCA CCGTCGTCGC
TACGCGCTGG CCAGCGGGAT CGCGGCCTGA
|
|---|
| Protein sequence | MRFDPEQQEL RQTVRTLLDR AAGGDVWRLL TEQVGALELA IPEQYGGAGF SVLETHVVLE
ELGAALAAPG YLSTTVAAQA ILAGDSEQAK AELLPGIAGG GTRAAVVWSG TVEAVVEAAV
GGGGDGWRLT GIEEHVLDGG DSGLFVAQAR MPGARGEAAG KPDSGRAPRQ ESGAGRGQAR
AETGLGQAQE SATDRGQARE AAIGRGPWQS LDAHSVSGYG VFVVSAADAV VSAVETVDPG
RPQACVEFRD SPAIFLGADP LLLERVLDLA CVAISAEQVG AAQRAFDLTL AYAKQRVQFG
RPIGSFQAVK HRLADMFTLL ESARSASYAA AFAAVSGNEL TVAASRAKAY CSEAFSTIAG
EAIQLHGGIG ITWEHPIHLY FKRAHVTSQL FGTPAWHRRR YALASGIAA
|
|---|
| |