Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_1327 |
Symbol | |
ID | 8332662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 1506091 |
End bp | 1508289 |
Gene Length | 2199 bp |
Protein Length | 732 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644954473 |
Product | Ricin B lectin |
Protein accession | YP_003112092 |
Protein GI | 256390528 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.12568 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAACCTG CCTTGAGAAT CCGCGTCTCC ACCGCCGGGT TCGGCGCGCT CGTCCTGACG GCGGGCCTGC TGACCTTCGG CCAAGTGGCG GCGGCGCCCA AGGCGCACGC CGCCGACCCG GTCGGCCCGA TCACCGGTTA CCAGGGCCTG TGCCTGGACG ACCGCTCGGC CTCGACCGCC AACTTCAACC CGGTGCAGGT CTACACCTGC AACGGCAGCA GCGCGCAGAG CTGGACCGTC GGCAGCGCGG GCAACACGTT GCAGGTCCTC GGCAAGTGCC TGGACGTCAA CGCGGCCGGC ACCGCCAACG GGACCGCCGT CGACCTCTAT GACTGCAACG GATCCGGCGC TCAGGTCTGG GTCCCGCAGT CCAACGGCGA GCTGCTGAAC CCCAACTCCG GCAAGTGCCT GGACGACACC GGCTTCGGCG GCTCCGGGAC GCAGGTCCAG ATCTGGGCCT GCGCCGACAG CGCCAACCAG CAGTGGGCGG TGCCGACCGG CGGCGGCGGC GGGGGCGGGG GCGGCGGGGG CATCCCGCAC CCGGACTTCG GTCCGAACGT CACCGTCTTC GACCCGTCGA TGTCGACCTC GACCATCCAG GGCGACATCA ACAGCGTCTA CAACTCTCAG GTGAACAACG AATTCGGCAC GCAGCGCAAC GCTCTGCTGT TCGCGCCGGG CTCGTACAAC GTCGACATCC CCGTCGGATA CAACACCGAA GTCGCAGGGC TCGGACTCTC CCCGGACGCG GTGAACATCA CCGGCGGCAC CGTCCACGTC GCCGGCCACA CCGCCGACGG CAACGCCACC CAGAACTTCT GGCGCGACGC GGAGAACATG GAAGTCAGCC CGCCCTCGGG CAGCACGATG TGGGCCGTCT CCCAGGCCGA CCCGTTCCGG CGCATGGACG TCAAGGGCAG CATGCTGCTC TACGACAACA TCCACGGCAG CGGCGGCAAC TGGTCCAGCG GCGGCTACGT CGGCGACTCG CGGATCAGCG GGCAGATCAA CTCCGGCACG CAGCAGCAGT TCCTGACGCA GAACACCGCG ATGAACGGCG GCTGGACCGG CTCGAACTGG AACATGGTCT TCGTCGGCGA CACCAACGCC CCGGCGAACA CGTTCCCGAA CCCGCCGGAC ACCACCGTCG CGCAGACCCC GGTGAACCGG GAGAAGCCGT TCATCTACGT GGACGCCAGC GGCACCTGGC AGGTGTTCGT CCCCGCGCTC CGGACGAACG CGCAGGGCCC TGACTGGACG AACGGCACAC CGGCCGGCAC GTCCATCCCG GTCAGCCAGT TCTACATCGT CAAGCCGGGC GACACCTCCG CCACGATCAA CGCCGCGCTG TCGGCGGGCA AGAGCCTGAT CGTGACGCCG GGTGTCTACC ACCTGTCCTC GGCGCTGAAC ATCACCAGCC CGAACACCGT GGTGCTGGGT CTGGGCCTGG CGACGCTGGT GCCGGACAAC GGCAACGCCG CGATCACCAC GGCCGACGTG GACGGCATCG ACATCGCCGG GCTGCTGATC AGCGCCAACT CCACCAACTC CGCGGTCATG ATGCAGATCG GTCCCAACGG TTCGACCGCG AGCCACGCGG CGAACCCGAC CGAGCTGCAG GACGTCTTCT TCCGTATCGG CGGCGACCAG GTGGGCAAGG CCACGCAGGC ATTGGTGGTG AACAGCAACA ACGTGATCGG CGACGACCTG TGGCTGTGGC GCGCCGACCA CACGAACGGG GTCGGGTGGA CCGTGAACCC GGCGCAGAAC GGGCTCGTGG TCAACGGGAA CAACGTGACC ATGTACGGGC TCGCGGTCGA GCACTTCGAG AAGTACCAGA CCGAGTGGTT CGGGAACGGC GGGCGGACTT ACTTCTACCA GAGTGAGACT CCGTACGACG TGCCGAACCA GGGCAGTTGG GTGCCGCCCA ACGGCGCCAC CGGGTACGCC TCGTACCTGG TCGGGCCTTC CGTCACGTCG CACCAGGCGT GGGGGTTGGG GGTCTACGCG TACTTCCCGG TCAACCCCTC GATGGTGCTG GACCACGCGA TCGAGACGCC GACCACGTCG GGCGTCGCGT TCCACGACAT GGTCACGACC GTGCTCGGCG GCGACGGAAC GCTCAACCAC CAGGTGAACG AGACCGGTGG GCAGGTCACG CCCAGCCACA ACGCCAGTTA CCTGGTGAGC TACCCGTAG
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Protein sequence | MEPALRIRVS TAGFGALVLT AGLLTFGQVA AAPKAHAADP VGPITGYQGL CLDDRSASTA NFNPVQVYTC NGSSAQSWTV GSAGNTLQVL GKCLDVNAAG TANGTAVDLY DCNGSGAQVW VPQSNGELLN PNSGKCLDDT GFGGSGTQVQ IWACADSANQ QWAVPTGGGG GGGGGGGIPH PDFGPNVTVF DPSMSTSTIQ GDINSVYNSQ VNNEFGTQRN ALLFAPGSYN VDIPVGYNTE VAGLGLSPDA VNITGGTVHV AGHTADGNAT QNFWRDAENM EVSPPSGSTM WAVSQADPFR RMDVKGSMLL YDNIHGSGGN WSSGGYVGDS RISGQINSGT QQQFLTQNTA MNGGWTGSNW NMVFVGDTNA PANTFPNPPD TTVAQTPVNR EKPFIYVDAS GTWQVFVPAL RTNAQGPDWT NGTPAGTSIP VSQFYIVKPG DTSATINAAL SAGKSLIVTP GVYHLSSALN ITSPNTVVLG LGLATLVPDN GNAAITTADV DGIDIAGLLI SANSTNSAVM MQIGPNGSTA SHAANPTELQ DVFFRIGGDQ VGKATQALVV NSNNVIGDDL WLWRADHTNG VGWTVNPAQN GLVVNGNNVT MYGLAVEHFE KYQTEWFGNG GRTYFYQSET PYDVPNQGSW VPPNGATGYA SYLVGPSVTS HQAWGLGVYA YFPVNPSMVL DHAIETPTTS GVAFHDMVTT VLGGDGTLNH QVNETGGQVT PSHNASYLVS YP
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