Gene Caci_1292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1292 
Symbol 
ID8332627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1467708 
End bp1468766 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content69% 
IMG OID644954439 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_003112058 
Protein GI256390494 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00715286 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCACGG AAACCACGGC GCAGACGTCC GAGACCTCCG CGGTGGAACC GGACGCGCTG 
CTGCAGGTCA GCAATCTGGT CAAGCACTTC CCGATCCGGC GCGGCCTGCT GCAGCGCCAG
GTCGGCGCGG TGCAGGCGGT GGACGGGATC AGCTTCTCCG TCCGCGCCGG GGAGACCCTC
GGCCTGGTCG GCGAGTCCGG CTGCGGCAAG TCCACGACCG GCAAGCTGCT GGCCCGCCTG
GACGAGCCCA CCGCCGGGCA GATCAAGTTC GACGGGCGCG ACATCGCGCA CATGAGCCAG
GGCCAGCTGC GGCCGCTGCG CCGGGACATC CAGATGGTGT TCCAGGACCC GCAGTCCTCG
CTGAACCCGC GGCACACCGT CGGCACCATC GTCGGCGCGC CCTTCCACAT CCAGGGCATC
CAGACCCCGA ACGGCGTGAA GAAGGCCGTC CAGGACCTGC TGTCCCTGGT GGGCCTGTCC
CCGGAGCACT ACAACCGCTA CCCGCACGAG TTCTCCGGCG GCCAGCGCCA GCGCATCGGC
ATCGCCCGGG CCCTGGCCCT CAAGCCCAAA CTGGTCATCG CCGACGAGCC GGTCTCCGCC
CTCGACGTGT CGATCCAGGC GCAGGTGATG AACCTCCTCG AGGACCTGCA GAACGAACTG
AACCTGGCCT ACGTCTTCAT CGCCCACGAC CTGTCGGTGG TCCGCCACAT CTCCGACCGC
GTCGCGGTGA TGTACCTCGG CAAGATCGTC GAGATCGCCG ACCAGGCCGA CATGTACACC
AAGCCGCACC ACCCCTACAC CACCGCCCTC CTGTCAGCGG TCCCCATCCC GGACCCCGAC
CGCAAGGACG GCAAAGCCGA AGGACAGGTG GAACGCATCC GCCTGGTCGG CGACGTCCCC
TCCCCGATCA ACCCCCCAGC CGGCTGCCGC TTCAACACCC GCTGCTGGAA GGCCCAGGAC
GTCTGCCGCA CCCAGGAACC CCCCCTCCTG CAGATCGGCC CGCCCTCCGC AGCCGGCTAC
GCACACCAGG TGGCCTGCCA CTTCCCGGAG AACGTGTAA
 
Protein sequence
MSTETTAQTS ETSAVEPDAL LQVSNLVKHF PIRRGLLQRQ VGAVQAVDGI SFSVRAGETL 
GLVGESGCGK STTGKLLARL DEPTAGQIKF DGRDIAHMSQ GQLRPLRRDI QMVFQDPQSS
LNPRHTVGTI VGAPFHIQGI QTPNGVKKAV QDLLSLVGLS PEHYNRYPHE FSGGQRQRIG
IARALALKPK LVIADEPVSA LDVSIQAQVM NLLEDLQNEL NLAYVFIAHD LSVVRHISDR
VAVMYLGKIV EIADQADMYT KPHHPYTTAL LSAVPIPDPD RKDGKAEGQV ERIRLVGDVP
SPINPPAGCR FNTRCWKAQD VCRTQEPPLL QIGPPSAAGY AHQVACHFPE NV