| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1285 |
|---|
| Symbol | |
|---|
| ID | 8332620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1458216 |
|---|
| End bp | 1459052 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644954432 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003112051 |
|---|
| Protein GI | 256390487 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGTGC TGGTTCTGCT GGCGGTGTTC GCGTCGGCGA TCAGTGGGTT GTTCGGGGTC
AGTCCGAATG GGCTGCATCC GGAGCTCACT GATGCCACGT TCGGGCCGCA TGGTGGCTTC
GGGGGTATCA GTTGGGCGCA TCCGCTTGGG GTGGATCAGC GGATGGGGCG GGATCTCTTG
GCGCGGCTGC TGTTCGGGGC TCGGGTGAGT CTGCTGATGG CCGGTGGGGC GACGTTGCTC
AGTGTCGGGT TGGGGGTGGC GCTGGGGGTG GTGTCGGGGT ACCTCGGGGG GCGCGTGGAT
TTGGTGATCA TGCGGGTCGC CGATGTGTTT CTGGCGTTTC CGTTGATGTT GTTCGCTTTG
GGGCTCACGG GGGCGTTGTC GGACTCGGCG TTCGGCTTGT CGGGCAACGC GTTGCGGATC
GCGATCATGA TTTTTGTGAT GGGGTTCTTC AACTGGCCCT ACATCGCGCG GATCGTGCGC
GCTGAGGTGC TCTCGTTGCG GGGGCGGGAG TTCGTCGACG CCGCGCGGGC CATGGGCGCC
TCGACGCGGT GGATCGTGTG GCGGGAGCTG CTGCCCAACC TCATGGCGCC GATTCTCGTC
TACACCACCC TGCTCATCCC GGCGAACATC GTCTTCGAAG CCGGATTGTC CGCATTGGGC
ATAGGTCTGG ACCCGCCTGC CTCTTCATGG GGGCAGATGA TGACCGATGC GGTCGCCACC
GTGTACACCG ACCCCGAGTA TCTGATCGTG CCGGGCATGG CAGTATTCAT CACCGTGCTG
GCGTTCAACC TGTTCGGCGA CGGATTGCGG AACGCCACCG ATCCCACCGC ACAGTGA
|
|---|
| Protein sequence | MVVLVLLAVF ASAISGLFGV SPNGLHPELT DATFGPHGGF GGISWAHPLG VDQRMGRDLL
ARLLFGARVS LLMAGGATLL SVGLGVALGV VSGYLGGRVD LVIMRVADVF LAFPLMLFAL
GLTGALSDSA FGLSGNALRI AIMIFVMGFF NWPYIARIVR AEVLSLRGRE FVDAARAMGA
STRWIVWREL LPNLMAPILV YTTLLIPANI VFEAGLSALG IGLDPPASSW GQMMTDAVAT
VYTDPEYLIV PGMAVFITVL AFNLFGDGLR NATDPTAQ
|
|---|
| |