Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_1248 |
Symbol | |
ID | 8332583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 1415124 |
End bp | 1415627 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644954395 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003112014 |
Protein GI | 256390450 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.574937 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGCCG AGGAAGAGGC GGAGTTCCGC GAGTACGTGG CCGGCCGCTG GACATGGCTG GTGCAAGCCG CGGCGCTGCT CACAGGGGAC GCCGGGCACG CCGAGGACCT GGCGCAGACA GCGCTGGTGC GGGTGTTCGC TTCGTGGGCG CGCGTGCGCG GCGCGGAGAG CATGGACGCC TACACCATGC GGATCCTGAT CAACCAGAAC AAGAACCGCT TCCGGAAGCG GCGCGTTGTG GAGGATCTCA CCGCTGTCCC GCCCGAGCGC GGAAGCGGTG ATCCGGATCT GACAGCGCGG GTCGATCAGC GGGCCGGCTT GATGGCGGCG CTGGCGTCGC TCCCCAAGCG GCAGCGCGAG GTCGTGGTGC TGCGGTACTG GGAGGACTAC AGCGAGGCGC AGACCGCGCA GATTCTCGGC TGTTCGGTCG GCACGGTGAA GAGCCAGTCG TCCAAGGCGC TGGCCAAATT GCGGGCGCAT GCCTCGGTGC TCGCCTCGCG CTGA
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Protein sequence | MRAEEEAEFR EYVAGRWTWL VQAAALLTGD AGHAEDLAQT ALVRVFASWA RVRGAESMDA YTMRILINQN KNRFRKRRVV EDLTAVPPER GSGDPDLTAR VDQRAGLMAA LASLPKRQRE VVVLRYWEDY SEAQTAQILG CSVGTVKSQS SKALAKLRAH ASVLASR
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