Gene Caci_1039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1039 
Symbol 
ID8332374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp1180592 
End bp1181212 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content69% 
IMG OID644954187 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003111806 
Protein GI256390242 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.68157 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.029552 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGCCG ATACCGACGA GTCAGTGACG CGCCCTTCGT CGGGCCCTGG TACGCGGGCG 
CGCATCCTCG CCGCGGCGAG CGAGCTGTTC TATGGGCAGG GCATTCGGGC CACGAGTGCT 
GACCGGATCA TCGAGCAGGT CGGGATCACG AAGGTCACCT TCTACCGGCA CTTCCGGACC 
AAGAGCGATC TTGTGGTCGC GTATCTGAAG GAGCAGGCCG CCGCCGAGCG GGGGTGGATG 
GAAAGCACGC GTCGTGAGGG CGACCCGGTG GGGTCGCTGC GCACACTCGC CACCGGAATC 
GGCGCGGCGA GTTGCCGTCC GGGGTTCCGG GGGTGCGCGT TCATCAACGC CGCGGCGGAG 
TTCGCTGATC CGGACGATCC GGTTCGGGCC GTGGTCGACG AGCATCGCGG GTGGATGTTG 
AGCGAGTTCG GCGCCATCGC CGCGGAGGCT GGGGCGAGCG ACGCCGGCGC CATCGCGCGG 
GAGCTGATGC TGCTTCGCGA TGGGGCGATG GTCAACGGCT ACCTCGGCGA TCCGGCGGCT 
GTCGCCGACT CACTCGCGGC CGCCTTCACT GCGATCATGG CAACGGTCGA GGCAGCCGCG 
GTCGAGGCAG CCGCGGTCTA G
 
Protein sequence
MHADTDESVT RPSSGPGTRA RILAAASELF YGQGIRATSA DRIIEQVGIT KVTFYRHFRT 
KSDLVVAYLK EQAAAERGWM ESTRREGDPV GSLRTLATGI GAASCRPGFR GCAFINAAAE 
FADPDDPVRA VVDEHRGWML SEFGAIAAEA GASDAGAIAR ELMLLRDGAM VNGYLGDPAA 
VADSLAAAFT AIMATVEAAA VEAAAV