Gene Caci_0946 details

Gene Information

• Locus tag: Caci_0946
• Symbol: rplF
• ID: 8332280
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Catenulispora acidiphila DSM 44928
• Kingdom: Bacteria
• Replicon accession: NC_013131
• Strand: +
• Start bp: 1089131
• End bp: 1089673
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644954099
• Product: 50S ribosomal protein L6
• Protein accession: YP_003111719
• Protein GI: 256390155
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.183711
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTCGTA TTGGACGGCT GCCGATCCCG GTTCCCACCG GCGTCGACGT CACCATCAAC 
GGCCAGGACG TGACCGTCAA GGGTCCAAAG GGCACCTTGT CGCACACGGT CGTCAACCCG 
ATCACGATCG AGAAGGGCGA GGACGGCAAC CTGGTCGTCT CGCGCCCGAA CGACGAGCGG 
ATCGCCAAGG AGCGCCACGG TCTGTCGCGC ACCCTGGTCA ACAACATGAT CATCGGCGTG 
ACCCAGGGCT ACACCAAGAG CCTGGAGATC TCCGGTGTCG GTTACCGCGT GACCGCCAAG 
GGCTCGGACC TGGAGTTCGC CCTCGGCTAC AGCCACCCGG TTCCGGTTCC GGCGCCCGCC 
GGCATCACCT TCGCCGTGGA GAGCCCCACC CGGTTCTCCG TGTCCGGGAT CGACAAGCAG 
CTGGTGGGCG AGACCTGCGC CTACATCAAG AAGCTGCGCA AGATCGACCC GTACAAGGGC 
AAGGGCATCA AGTTCACCGG CGAGGTCATC CGCCGGAAGG CCGGAAAGGC TGGGAAGAAG 
TAA 

 

Protein sequence

MSRIGRLPIP VPTGVDVTIN GQDVTVKGPK GTLSHTVVNP ITIEKGEDGN LVVSRPNDER 
IAKERHGLSR TLVNNMIIGV TQGYTKSLEI SGVGYRVTAK GSDLEFALGY SHPVPVPAPA 
GITFAVESPT RFSVSGIDKQ LVGETCAYIK KLRKIDPYKG KGIKFTGEVI RRKAGKAGKK