Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0862 |
Symbol | |
ID | 8332192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 1001494 |
End bp | 1003236 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644954012 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003111636 |
Protein GI | 256390072 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.109267 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTGACGG AAACTGACGC GAACCTGGTC TCAGCGGCGG CGGCCGGAGA CCCGGTCGCT TTGGAGCGCC TGGTCTCCGA CTACTTGCCG CTGGTCTACA ACATCGTGGG GCGCGCGCTC CCGGTGGCGG CCGATGTCGA TGACGTGGTG CAGGAGACGA TGCTGCGCGT CGTGCGGAGC CTGCCGACGC TGCGCGACCC GCGGGTGTTC CGGTCCTGGC TGGTCGCGGT GGCGATGAAC CAGGTGCGCG ACCACGTGCG GGCCTACCAG GGTCGGCCGC GGCCGCTCGA CGAGGCGCCG GAGCTGGCCG ATCCCGGGGC GGACTTCGCG GATCTGACGC TCACGGAGCT GGGCCTGACC GGGCAGCGGC GCGAGGTCGC GATGGCCACG GCCTGGCTCG ACGACGACGA CCGCGAGCTG CTGTCCCTGT GGTGGCTCGT GGAGGCCGGA CACCTGACGC GCGGGGACCT GGTCGACGCG CTCGGGCTGG AGCCGCACCA CGTCACGGTC CGGATCGCGC GGATGAAGGG GCAGCTGGAG ACGTCGCGGG CCGTGGTGCG CGCGCTGTGT GCCGCCCCGA TCTGCCTGGA GCTCTCCGAC CTCGCCATGC ACTGGCACGG TCGCCCCGAA CCCTTGTGGC GCAAGCGCTT CGCGCGGCAC GTCCGGCAGT GCCCGACCTG CTCGGGGCTG GCGACCGACT TCGTCCCCGC CGAGCGCCTG CTGGTCCGGC TGCCGCTGGT GCCGCTGCCG TTCGGGCTGG CCGAGGCGGT GCATCACGCG GTGCCCGCGG TTCTGCACTC TGCGGCTGGT GCGACGGGGG CAGCAGGCGC CGGCGCGGGT GCGGGCGCAT CAACGCAGCA GCTACCGCCG CTTGGCGGAC ACGGACCGGC ACTGTCCTCG CATCGCCGAA TACCCAAGGG CGGCGCACGC TCGGCCGCCT CGCACTTCGC CGCCAAGGCG GCCGTCGCCC TGGCCGCGAC CGCCGCGGTC GTCGGCGCCG TGGTCGTGAC GACCGGAGCC ACCGACACCA AGGCCGACTC CGGGCCCGGC AGCGCCACGA CGTCGGTCGG AGGCAGCGGA AGCTCGAACT CCCCGATCGC CACGACCCCG ACGCCCTCGG GTTCCGTCAG CTCGTTGGTC GGATCGACTT CCTCGCTCCC GCCCACGTCC AGCCCCGACT CCGCCAAGTC GACGCCCAGC ACCTCGAAAA GCAGCATTAA ACCCACGCAG TCCACGACCA GCTCTGCCCC GTCGCGGAGC TCGGCTGCCA GCTCGCACAG CGCGCCGGCG ACCACGTCGG CGTCGACCGT TGCGAACCAG AGCGACGCGG CGAACCAGGT CCTGGCCGTG ATCAACCAGG CGCGCGCGGG GCAGGGCTTG GCGCCGCTGA CCATCACCGC GGGTCTCAAC AAGAGCGCGG CGGCGCACAC CTCTGTCATG TCCTCCGGCT GCGGCCTGTC GCACCAGTGC CCCGGCGAGC CGGCGCTCGG CGACCGCGAG ACCGCTGCGG GCGTGTCGTG GATGTCGGCG GGCGAGAACA TCGGCGAGGG AGGACCGGTG TCGAACACGA GTGCCGCCAT CGCTTCCATG GCTGTCGGGC TGACCAACAG CATGCTCGCC GAGCAGCCGC CGGACGACGG ACACCGGCGC AACATCCTGA GCACGGACTT CCACCACGTC GGGATATCGG TGTACCGCGA CAGCAAGGGC ACGGTCTGGA TGACGCAGGA CTTCTCGAAC TGA
|
Protein sequence | MVTETDANLV SAAAAGDPVA LERLVSDYLP LVYNIVGRAL PVAADVDDVV QETMLRVVRS LPTLRDPRVF RSWLVAVAMN QVRDHVRAYQ GRPRPLDEAP ELADPGADFA DLTLTELGLT GQRREVAMAT AWLDDDDREL LSLWWLVEAG HLTRGDLVDA LGLEPHHVTV RIARMKGQLE TSRAVVRALC AAPICLELSD LAMHWHGRPE PLWRKRFARH VRQCPTCSGL ATDFVPAERL LVRLPLVPLP FGLAEAVHHA VPAVLHSAAG ATGAAGAGAG AGASTQQLPP LGGHGPALSS HRRIPKGGAR SAASHFAAKA AVALAATAAV VGAVVVTTGA TDTKADSGPG SATTSVGGSG SSNSPIATTP TPSGSVSSLV GSTSSLPPTS SPDSAKSTPS TSKSSIKPTQ STTSSAPSRS SAASSHSAPA TTSASTVANQ SDAANQVLAV INQARAGQGL APLTITAGLN KSAAAHTSVM SSGCGLSHQC PGEPALGDRE TAAGVSWMSA GENIGEGGPV SNTSAAIASM AVGLTNSMLA EQPPDDGHRR NILSTDFHHV GISVYRDSKG TVWMTQDFSN
|
| |