Gene Caci_0862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0862 
Symbol 
ID8332192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1001494 
End bp1003236 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content72% 
IMG OID644954012 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003111636 
Protein GI256390072 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.109267 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGACGG AAACTGACGC GAACCTGGTC TCAGCGGCGG CGGCCGGAGA CCCGGTCGCT 
TTGGAGCGCC TGGTCTCCGA CTACTTGCCG CTGGTCTACA ACATCGTGGG GCGCGCGCTC
CCGGTGGCGG CCGATGTCGA TGACGTGGTG CAGGAGACGA TGCTGCGCGT CGTGCGGAGC
CTGCCGACGC TGCGCGACCC GCGGGTGTTC CGGTCCTGGC TGGTCGCGGT GGCGATGAAC
CAGGTGCGCG ACCACGTGCG GGCCTACCAG GGTCGGCCGC GGCCGCTCGA CGAGGCGCCG
GAGCTGGCCG ATCCCGGGGC GGACTTCGCG GATCTGACGC TCACGGAGCT GGGCCTGACC
GGGCAGCGGC GCGAGGTCGC GATGGCCACG GCCTGGCTCG ACGACGACGA CCGCGAGCTG
CTGTCCCTGT GGTGGCTCGT GGAGGCCGGA CACCTGACGC GCGGGGACCT GGTCGACGCG
CTCGGGCTGG AGCCGCACCA CGTCACGGTC CGGATCGCGC GGATGAAGGG GCAGCTGGAG
ACGTCGCGGG CCGTGGTGCG CGCGCTGTGT GCCGCCCCGA TCTGCCTGGA GCTCTCCGAC
CTCGCCATGC ACTGGCACGG TCGCCCCGAA CCCTTGTGGC GCAAGCGCTT CGCGCGGCAC
GTCCGGCAGT GCCCGACCTG CTCGGGGCTG GCGACCGACT TCGTCCCCGC CGAGCGCCTG
CTGGTCCGGC TGCCGCTGGT GCCGCTGCCG TTCGGGCTGG CCGAGGCGGT GCATCACGCG
GTGCCCGCGG TTCTGCACTC TGCGGCTGGT GCGACGGGGG CAGCAGGCGC CGGCGCGGGT
GCGGGCGCAT CAACGCAGCA GCTACCGCCG CTTGGCGGAC ACGGACCGGC ACTGTCCTCG
CATCGCCGAA TACCCAAGGG CGGCGCACGC TCGGCCGCCT CGCACTTCGC CGCCAAGGCG
GCCGTCGCCC TGGCCGCGAC CGCCGCGGTC GTCGGCGCCG TGGTCGTGAC GACCGGAGCC
ACCGACACCA AGGCCGACTC CGGGCCCGGC AGCGCCACGA CGTCGGTCGG AGGCAGCGGA
AGCTCGAACT CCCCGATCGC CACGACCCCG ACGCCCTCGG GTTCCGTCAG CTCGTTGGTC
GGATCGACTT CCTCGCTCCC GCCCACGTCC AGCCCCGACT CCGCCAAGTC GACGCCCAGC
ACCTCGAAAA GCAGCATTAA ACCCACGCAG TCCACGACCA GCTCTGCCCC GTCGCGGAGC
TCGGCTGCCA GCTCGCACAG CGCGCCGGCG ACCACGTCGG CGTCGACCGT TGCGAACCAG
AGCGACGCGG CGAACCAGGT CCTGGCCGTG ATCAACCAGG CGCGCGCGGG GCAGGGCTTG
GCGCCGCTGA CCATCACCGC GGGTCTCAAC AAGAGCGCGG CGGCGCACAC CTCTGTCATG
TCCTCCGGCT GCGGCCTGTC GCACCAGTGC CCCGGCGAGC CGGCGCTCGG CGACCGCGAG
ACCGCTGCGG GCGTGTCGTG GATGTCGGCG GGCGAGAACA TCGGCGAGGG AGGACCGGTG
TCGAACACGA GTGCCGCCAT CGCTTCCATG GCTGTCGGGC TGACCAACAG CATGCTCGCC
GAGCAGCCGC CGGACGACGG ACACCGGCGC AACATCCTGA GCACGGACTT CCACCACGTC
GGGATATCGG TGTACCGCGA CAGCAAGGGC ACGGTCTGGA TGACGCAGGA CTTCTCGAAC
TGA
 
Protein sequence
MVTETDANLV SAAAAGDPVA LERLVSDYLP LVYNIVGRAL PVAADVDDVV QETMLRVVRS 
LPTLRDPRVF RSWLVAVAMN QVRDHVRAYQ GRPRPLDEAP ELADPGADFA DLTLTELGLT
GQRREVAMAT AWLDDDDREL LSLWWLVEAG HLTRGDLVDA LGLEPHHVTV RIARMKGQLE
TSRAVVRALC AAPICLELSD LAMHWHGRPE PLWRKRFARH VRQCPTCSGL ATDFVPAERL
LVRLPLVPLP FGLAEAVHHA VPAVLHSAAG ATGAAGAGAG AGASTQQLPP LGGHGPALSS
HRRIPKGGAR SAASHFAAKA AVALAATAAV VGAVVVTTGA TDTKADSGPG SATTSVGGSG
SSNSPIATTP TPSGSVSSLV GSTSSLPPTS SPDSAKSTPS TSKSSIKPTQ STTSSAPSRS
SAASSHSAPA TTSASTVANQ SDAANQVLAV INQARAGQGL APLTITAGLN KSAAAHTSVM
SSGCGLSHQC PGEPALGDRE TAAGVSWMSA GENIGEGGPV SNTSAAIASM AVGLTNSMLA
EQPPDDGHRR NILSTDFHHV GISVYRDSKG TVWMTQDFSN