| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0847 |
|---|
| Symbol | |
|---|
| ID | 8332177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 982035 |
|---|
| End bp | 982676 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644953997 |
|---|
| Product | NADH dehydrogenase (ubiquinone) 30 kDa subunit |
|---|
| Protein accession | YP_003111621 |
|---|
| Protein GI | 256390057 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000348017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000000679194 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGA CCGAGACCTG GGACGACGTC CAGGAGACCT TCGGCGAACG GACCGTCACC
GTCGCCTCCG GCGACTGGCT GGCCACCCTG GAGCGGGCGC ACGGACTGGG CTACACCTTC
TTCGACTGGC TGACCGCGGT CGACGAGGAG GCCGCCGGGT TCGACGTCTT CGCGCACGTC
GCCAAGATCG TGGGCGACGA GCGGGCCACG CGGCTGCTGA TCAGGACCCG CATCCCGAAG
GACAAGCCCG AGCTGCCCTC GGCCGTGCCC ATCTACCGGG GCGCGAACTG GCACGAGCGC
GAGACGTTCG AGATGTTCGG CATCACGTTC GCCAACCACC CGAACCTGAT CCCGCTCCTG
CTGCCCGACG GCTTCGACGG CCATCCGCTG CGCAAGGACT TCGTCCTGGC CGCGCGGGTC
GCCAAGGAGT GGCCCGGCGT CAAGGAGCCG GGGGAGGGCG GGCCCGCGCA CGCCGCACCC
GCCGGACGCG CGACCCGTCG CCGGATGGTT CCGCCCGGCG TTCCCGACGG CTGGCTGAAG
CCCCTCTCGG ACCAGCCGGA GGAGGCTCCC GCGGCCGACG CCTCTGACCC CTCCGCGCCG
ACCGACCCGG GAACCTCGCA GCCACAGGAA GGCGGAGCAT GA
|
|---|
| Protein sequence | MTETETWDDV QETFGERTVT VASGDWLATL ERAHGLGYTF FDWLTAVDEE AAGFDVFAHV
AKIVGDERAT RLLIRTRIPK DKPELPSAVP IYRGANWHER ETFEMFGITF ANHPNLIPLL
LPDGFDGHPL RKDFVLAARV AKEWPGVKEP GEGGPAHAAP AGRATRRRMV PPGVPDGWLK
PLSDQPEEAP AADASDPSAP TDPGTSQPQE GGA
|
|---|
| |