| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0827 |
|---|
| Symbol | |
|---|
| ID | 8332157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 961680 |
|---|
| End bp | 962081 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644953978 |
|---|
| Product | PilT protein domain protein |
|---|
| Protein accession | YP_003111602 |
|---|
| Protein GI | 256390038 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1487] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00471695 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAGC CTGTCGTGAT GGACACGGAC GTCGCGTCCG CGTCCTTCAA GCGCAAGGCG
CTTCCACTGC TCGTCAAAGT AGCCACGATG GAGCCGGTCA TCACGTTCGT GACGTTCGGC
GAGTTGGTGA AGTGGACCGA GCGTCGGCAC TGGGCTCCCC ACAACCGGGT CGCGATGGAC
AGCTGGCTTG CAGCCATGCC TGTTCTCGAC AGCACCGAAG CCATCGCCAG GACTTGGGGT
TCACTAGCCG CGGCCGCGGA TGAGCGCGGA CGTCCCAGAC CGCAGAACGA CATGTGGATC
GCGGCTGTCT GTCTGACCTA CGGCATTCCG CTAGCGACGT TCAACCTCAA GGACTATGCC
GATTTCGAGG CCTATCACGG GCTTCACATC GTCAAGGTCT AG
|
|---|
| Protein sequence | MPQPVVMDTD VASASFKRKA LPLLVKVATM EPVITFVTFG ELVKWTERRH WAPHNRVAMD
SWLAAMPVLD STEAIARTWG SLAAAADERG RPRPQNDMWI AAVCLTYGIP LATFNLKDYA
DFEAYHGLHI VKV
|
|---|
| |