| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0826 |
|---|
| Symbol | |
|---|
| ID | 8332156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 960329 |
|---|
| End bp | 961666 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644953977 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003111601 |
|---|
| Protein GI | 256390037 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0133679 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCGCA GCACGCACGG CGGGCGTCCT TCGCAGCCGG CCATCCGGAT GCGCCGCGCG
GCCGCGACGC TGATCGCGAC CGGGGTGATC GGCGCGGGCG TGTGGTTCGC CACCGATCGC
GGGGTGTGGA GCGAGGGCGG CAGCACGGGC ATGAGCGGGA TGGCCGGGAT GGACAGCGGC
GCCGGGCGAG GTCGTTCTGG TTCCGGTTCC GGTTCGAGCG CAGGCTCTTC GGGGTCCGCG
CTGGCAGCCG CTGGCGCGCC GGGCAGTGCC TCCGCCGGAT CACCGCGCAG CGCCGGCGCG
CTCGTCCCCG CCGCCCTGCC GGGGATGCCG GGCTACGACC CCGCCGACCT GTACGCCTTC
GACCGCCCCG GCATGGTGTC GCCGGTGATC GCCGCGGCGC TTCCCCGCGT CTACGTCCCG
AACACCGAGA GCGACACCGT CACGGTGATC GACCCCTCGG ACTACCGCGT CGTGGAGACG
ATGAAGGTCG GCCACGAACC GCAGCACGTG GTCCCCTCCT GGGACCTGAA GACCCTGTGG
GTCAACAACG ACCTGGGCAA CAGCCTGACC CCGATCGACC CCTTCACCGG CAAGCCCGGC
GCCCCGATCC CGGTCCACGA CCCGTACAAC CTCTACTTCA CCCCGGACGG CGCCTCAGCG
GTCGTGATGG CCAGCAAGGA CATGCAGCTG GTCTTCCGCG ACCCGCACAC CATGGCGATC
CAGAAGATCC TCCCCGTCCC CTGCGAAGGC GTGAACCACG CCGACTTCTC CCCGAACGGC
GCCTACTTCA TTGTCTCCTG CGAGTTCTCC GGCCAACTCC TGAAGGTGGA CACCAAAACC
CGCACCCTCC TCGGCGTCCT GGACCTCCCC CAACGCGGCG CGATGCCCCA GGACGTGAAA
ATCTCCCCCG ACGGCAAGGT CTTCTACATC GCCGACATGG TGGCCAACGG CCTCTGGACC
GTCGACGGCG ACGCCTTCAA AGTAACGGGC CTGATCCCCA CCGGCCGAGG CGCCCACGGC
CTCTACGTCT CCCGCGACTC GACCACCATG TACGTCTCCA ACCGAGGCGA AGGCACCATC
ACCCTCTTCG ACTTCGCCAC CGCCAAACCC CGCACCAAAT GGCAAATCCC CAACGGCGGC
TCCCCCGACA TGGGCGGCGT CAGCGCCGAC GGCAAAGTCC TCTGGCTCTC CGGCCGCTAC
AACGCCGAGG TCTACGCCAT CTCCACCACC GACGGCCACC TCCTAGCCCG CATCCCCGTA
GGCCGCGGCC CCCACGGCCT AGCCGTCTAC CCCCAACCAG GCCGCTACTC GCTGGGCCAC
ACCGGGGTGT TCCGCTAG
|
|---|
| Protein sequence | MTRSTHGGRP SQPAIRMRRA AATLIATGVI GAGVWFATDR GVWSEGGSTG MSGMAGMDSG
AGRGRSGSGS GSSAGSSGSA LAAAGAPGSA SAGSPRSAGA LVPAALPGMP GYDPADLYAF
DRPGMVSPVI AAALPRVYVP NTESDTVTVI DPSDYRVVET MKVGHEPQHV VPSWDLKTLW
VNNDLGNSLT PIDPFTGKPG APIPVHDPYN LYFTPDGASA VVMASKDMQL VFRDPHTMAI
QKILPVPCEG VNHADFSPNG AYFIVSCEFS GQLLKVDTKT RTLLGVLDLP QRGAMPQDVK
ISPDGKVFYI ADMVANGLWT VDGDAFKVTG LIPTGRGAHG LYVSRDSTTM YVSNRGEGTI
TLFDFATAKP RTKWQIPNGG SPDMGGVSAD GKVLWLSGRY NAEVYAISTT DGHLLARIPV
GRGPHGLAVY PQPGRYSLGH TGVFR
|
|---|
| |