Gene Caci_0647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0647 
Symbol 
ID8331977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp752952 
End bp754583 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content71% 
IMG OID644953800 
Productdelta-1-pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_003111424 
Protein GI256389860 
COG category[C] Energy production and conversion 
COG ID[COG1012] NAD-dependent aldehyde dehydrogenases 
TIGRFAM ID[TIGR01236] delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.143649 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.93944 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCCA TCACCCACAC CCCCGCCCCG GTCAACGAGC CGGTCCGCGC CTACGCCCCG 
GGCTCGGCCG AGCGCGACTC GCTCCAGCGC CGGGTCGCCG AGATCGCGGC CGAGCGCCAC
GAGCTGCCGA TGACGATCGC CGGGCGGCGC CGGATGGCCT CCGGCGAGCG CGTCGAGGTC
GTCCAGCCGC ACAACCACAA GCACGTGCTC GGCGACACCG CCAACGCCTC CGCGGCCGAC
GTCGCGGACG CCGTGGCGGC GGCCAAGGCG GCGGCGCCGG CCTGGCGCGC GCTGCCCTTC
GACGAGCGCG CGGCGGTCAT CCTGCGCGCC GCGGACCTGC TGTCGGGCCC GTGGCGGGAC
ACCGTCAACG CCGCGACCCT GCTCGGCCAG TCGAAGTCGG CGCAGCAGGC GGAGATCGAC
GCGGCCTGCG AGCTGATCGA CTTCTGGCGC TTCAACGTGC ACTTCGCGCG GCAGATCCTG
GCCGAGCAGC CGCCGGCCAA CTCCGCCGGC GTCTGGAACC GCACCGACTA CCGGCCGCTG
GACGGCTTCG TCACCGCGAT CACCCCGTTC AACTTCACCG CCATCGCCGG CAACCTGCCG
ACCGCCCCGG CGCTGATGGG CAACACCGTG GTGTGGAAGC CCTCGCCGAC GCAGCAGCTG
GCCGCGCAGT ACACGATGGA GCTGCTGGAG GCCGCCGGGC TCCCGGCCGG CGTCATCAAC
CTGGTCACCG GCGACGGCCT GGCGGTCAGC GAGGTCGCGC TGAACGACCG CGAGTTCGGC
GGTCTGCACT TCACCGGCTC CACCAAGACG TTCAAGGCCC TGTGGCGCCA GACCGCGGAG
AACCTGGACG TCTATCGCTC CTACCCGCGC ATCGTGGGCG AGACCGGCGG CAAGGACTTC
GTCGTCGCGC ACCCGAGCGC CGACGCGGCC GCTCTGGTCA CCGCGCTGGT CCGGGGAGCG
TTCGAGTACC AGGGGCAGAA GTGCTCCGCG GCTTCGCGTG CCTACATCCC GCGCTCCCTG
TGGGAGTCCG GCGTGCGGGA GCAGTTGGCC GACGTCACCG GGACCATCAC CTACGGCGAC
GTCACCGACT TCTCCTACTT CGGCGGCGCG GTCATCGACC GCCGGGCCTT CACCAAGCAC
AGCGACCTGT TCGCGCGGGT CCGTGCCGAG GGCAAGGTGG AGATCCTCGC CGGCGCCACG
GCGGACGACT CACAGGGCTT CTTCGTGCAG CCGACGATCC TGGTCGGCGA GGACCCGCAC
CACGAGATCT TCACCGACGA GTACTTCGGT CCGATCCTCG CGGTGCACGT CTATGAGGAC
GCGCGCTATA GCGAAGTCCT GGAGTTGGTC GACAGCTCCA CGCCCTATGC GTTGACCGGC
TCCGTGTTCG CCACGGACCG CGCCGCCGTG GAAGAGGCGC ACCGCAAGCT GCGCTTCGCC
GCCGGCAACT TCTACGTCAA CGACAAGCCG ACCGGCGCGG TCGTCGGGCA GCAGCCGTTC
GGCGGCGGCC GGGCCTCCGG GACCAACGAC AAGGCCGGCT CCGCGCAGAA CCTGCTGCGC
TGGCTGAGCC CGCGCACAGT GAAGGAGACT TTCGTGCCGC CGGTGGACCA CCGGTACCCG
CACATGGGCT GA
 
Protein sequence
MDAITHTPAP VNEPVRAYAP GSAERDSLQR RVAEIAAERH ELPMTIAGRR RMASGERVEV 
VQPHNHKHVL GDTANASAAD VADAVAAAKA AAPAWRALPF DERAAVILRA ADLLSGPWRD
TVNAATLLGQ SKSAQQAEID AACELIDFWR FNVHFARQIL AEQPPANSAG VWNRTDYRPL
DGFVTAITPF NFTAIAGNLP TAPALMGNTV VWKPSPTQQL AAQYTMELLE AAGLPAGVIN
LVTGDGLAVS EVALNDREFG GLHFTGSTKT FKALWRQTAE NLDVYRSYPR IVGETGGKDF
VVAHPSADAA ALVTALVRGA FEYQGQKCSA ASRAYIPRSL WESGVREQLA DVTGTITYGD
VTDFSYFGGA VIDRRAFTKH SDLFARVRAE GKVEILAGAT ADDSQGFFVQ PTILVGEDPH
HEIFTDEYFG PILAVHVYED ARYSEVLELV DSSTPYALTG SVFATDRAAV EEAHRKLRFA
AGNFYVNDKP TGAVVGQQPF GGGRASGTND KAGSAQNLLR WLSPRTVKET FVPPVDHRYP
HMG