Gene Caci_0419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0419 
Symbol 
ID8331746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp469477 
End bp470052 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content71% 
IMG OID644953585 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003111212 
Protein GI256389648 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.829788 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGGAGT TCACCGAGTT CGCGCAGGCG CGCCAAGCGC ACATGCGGCG GATGGCGTTC 
CTGTTGTGCG GGAACTGGCA TGACGCGCAG GACGTCACCC AGATCGCGCT GATGAACCTG
TGCCGGGCGT GGAGCCGGGC GCGGCGGGCG GACTCCATCG ACGCCTACGC GCATCGCGTC
GTCGTCCGCG CCTATCTTAG TCAGCGCAAG AAGGTGCTGC GGCAGCAGGC ACGCGCTGTG
GAGTACGCGC GCGCCTCCGA GCGTGTGCCG GGTTCGGCTG AGGAGTCGGG GGAGCCCGAG
CTGCGGATGG CGCTGCTCGC CGCGCTGGCC CAGCTTCCGC CGCGCGGGCG GGCGGTCGTG
GTTCTCCGGT TCTGGGAGGA CCTGAGCATC GAGGCGACCG CTGAGGCGCT CGGGTGCTCG
ACCGGGAATG TGAAGAGCCA GGCCTCGCGG TCGTTGGCCA AGCTGCGGGA GATCCTCGGC
GACTCGCTGT TCGACGAGGG CGACGGGGGC GGGCCTCGTC GCGCGCATGT GCACGCCGGG
GTGCGTCCGG TGTGGGAAGT GGATGGCCGA GCATGA
 
Protein sequence
MPEFTEFAQA RQAHMRRMAF LLCGNWHDAQ DVTQIALMNL CRAWSRARRA DSIDAYAHRV 
VVRAYLSQRK KVLRQQARAV EYARASERVP GSAEESGEPE LRMALLAALA QLPPRGRAVV
VLRFWEDLSI EATAEALGCS TGNVKSQASR SLAKLREILG DSLFDEGDGG GPRRAHVHAG
VRPVWEVDGR A