| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0415 |
|---|
| Symbol | |
|---|
| ID | 8331742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 462581 |
|---|
| End bp | 464764 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644953581 |
|---|
| Product | SNF2-related protein |
|---|
| Protein accession | YP_003111208 |
|---|
| Protein GI | 256389644 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAGAG GACAGGCGTT CACCAACTCG TCTGGTGTGA AGTCTGTGCT GCATGCTGCT
GCGGATGCTG AGACGGCGAT CCGTGAGATG CATGAGGGGG ACGAGCGGCG GCATCAGGCT
GTGCGGGATG CCTATCAGGC CTCGCACGCT GTTGCCGTTC TTGGGCGGTT GCGGTCTATT
TCCATTGAGC GGCTCAGAGA TGTGACCGGG GCTCGGCTTC CGGTCACGAA GCTGGAAGAG
GCCGGGTACA AGTCCATCGC TGATCTGCTT GAGGCGACGC CGGAGCAGTT GCAGCAGGTG
CCGGGGATCG GGACCAAGGG TGCTGAGCGC ACCGTGGATG CGGCGCGGCG GATTGCTGAT
GCCGCCATGT CCGGTACGCA TGTCACCGCT GACATGGATC TGCGGGTCGC GGATGCCGCT
ACGCTGCTCG CCGCCTTGTA CCGCGTGCAG ACCGCGGACC GGGTGCTGCT GAAGGTTCGT
GAGCCGGCGA AGCGGATCGG TGGGGCGCTG ACGAGTTTGG CCGACACCGC CAAGCCGCTC
AGCAGTCGGA TGCGGCGGGT GATCACCGGG CGTGCCAAGC GCGAGGAGGC GCAGGGCGCG
GTCGATCGGC TGGAGGGGCT GCTCGGCGAT CCCGCGACGA ACCAGGATCT GGAGCGCATC
AAGGCGGCGA ACGAGAAGCT GCGGGGGGTC AAGCCGCCGC GGCCGAGTGT CGTCCGCAAC
GACTTCGAGA AGCGTTCCGC CGACTACTTC AGCACCCTGA GCCGCATCGC GGGTGCCCGG
GCGAACGGCG AGGCGGCGCG CGGCTTTCTG CCCACGAGCC TTGCCGACCG GATCGGGGTG
CAGCAGCTCG ACGAGACGCA TCTGCGCGTC TCCTTACGCG CCTACCAAGC GTTCGGCGTC
CGCTTCGCGC TCGCTCAGAA GCGCGTCGTC ATCGGCGACG AGATGGGCTG TGGCAAGACC
GTCGAGGCGA TAGCGACGCT CGCGCACCTG CGCGCCGAGG GCGCGAAGCA CTTCCTCGTC
GTCGTCCCTG CCAGTGTGCT GATCAACTGG CTCCGCGAGG TGCGTGCGCA CAGCTCCCTG
CGTCCCTATC GGCTGCACGG CCCGCAGGGG GAAGCCGCCC TGAAGGCGTG GCTGTCCGGC
GGCGGCGTCG GCATCACCAC CTTCGAAGCC CTCCCGAACC TGGAGCTGCC GCCCCGGACG
CGCATCTCGA TGCTCGTCGT CGACGAGGCG CACTATGTGA AGAACCCCAA CACGATGCGC
TCCAGAGCCG TGCGTGCCTG GACCGACCGG GTCGAGCGCG TCATGTTCCT GACCGGCACG
CCGATGGAGA ACCGCGTCGA GGAGTTCCGC AACCTGGTCG GCTATCTCCA GCCGGATCTC
GTCGACTCGG TCGGGGAGAT CGACGCGGTC GCCGGCTCCG AAGCCTTCCG CAAAGCCGTG
GCGCCCGCCT ATCTCCGGCG AAACCAGGAA GACGTGCTCT CCGAGCTCCC CGAAATGGTG
AAGATCGAGG AGTGGGAAGA GTTCGGACCC GAGGAAGAGG CCATGTATCG CGATGCGGTC
GCGGCGCGGA ACTTCATGGC GATGCGGCGT GCGGCGTACG CCACGGGCGA CCCGGCCACG
TCGGCGAAAC TGCGCCGCTT GGTCGAGATC GTCGACGAAG CCGAGGCCAA CAGCCGGAAA
GTGGTCGTCT TCTCCTACTT CCGCGACGTC CTGGACACCG TGTGCCGAGC CCTCGGCGAC
CGTGCCAGCG GGCCGCTCAC CGGCTCCATG CAGCCGCAGC ACCGCCAGGA ACTCGTCGAT
GCCTTCACCG CCGCGAAGAA GCACGCCGTT CTGGTCAGCC AGATCCAGGC CGGCGGCGTG
GGCCTGAACA TGCAGGCGGC CTCGGTGGTC ATCCTGTGCG AGCCGCAGGT CAAGCCCACC
CTGGAGACCC AGGCGATCGC CAGGGCGCAC CGCATGGGCC AGATCCGCCG CGTCCAGGTG
CACCGGCTGC TGGTCGCCGA CAGCGTCGAC CAGCGGATGC TGGAGATCCT GGACGCCAAG
TCAGGACTCT TCGACGCCTA CGCTCGCCGC AGCGAGACCG CCGAAACGAT GCCGGAGGCG
AAGGATCTGT CCGACGCCTC GGTGCGCAAG CAGCTCATCG ACGCCGAGCA GGAACGGCTC
GGGTTGGACA AGGCGCGCTC GTGA
|
|---|
| Protein sequence | MPRGQAFTNS SGVKSVLHAA ADAETAIREM HEGDERRHQA VRDAYQASHA VAVLGRLRSI
SIERLRDVTG ARLPVTKLEE AGYKSIADLL EATPEQLQQV PGIGTKGAER TVDAARRIAD
AAMSGTHVTA DMDLRVADAA TLLAALYRVQ TADRVLLKVR EPAKRIGGAL TSLADTAKPL
SSRMRRVITG RAKREEAQGA VDRLEGLLGD PATNQDLERI KAANEKLRGV KPPRPSVVRN
DFEKRSADYF STLSRIAGAR ANGEAARGFL PTSLADRIGV QQLDETHLRV SLRAYQAFGV
RFALAQKRVV IGDEMGCGKT VEAIATLAHL RAEGAKHFLV VVPASVLINW LREVRAHSSL
RPYRLHGPQG EAALKAWLSG GGVGITTFEA LPNLELPPRT RISMLVVDEA HYVKNPNTMR
SRAVRAWTDR VERVMFLTGT PMENRVEEFR NLVGYLQPDL VDSVGEIDAV AGSEAFRKAV
APAYLRRNQE DVLSELPEMV KIEEWEEFGP EEEAMYRDAV AARNFMAMRR AAYATGDPAT
SAKLRRLVEI VDEAEANSRK VVVFSYFRDV LDTVCRALGD RASGPLTGSM QPQHRQELVD
AFTAAKKHAV LVSQIQAGGV GLNMQAASVV ILCEPQVKPT LETQAIARAH RMGQIRRVQV
HRLLVADSVD QRMLEILDAK SGLFDAYARR SETAETMPEA KDLSDASVRK QLIDAEQERL
GLDKARS
|
|---|
| |