Gene Caci_0408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0408 
Symbol 
ID8331735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp454259 
End bp455722 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content70% 
IMG OID644953574 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_003111201 
Protein GI256389637 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.417643 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCAGA CAGATTCGCT CGCTCGTGAT GCCGAGCGGG TCGGTTCTGG GGCTGAGGCT 
CGCTTTGACT CTGACGCTCG CTCGGGATCT GGCTCTGGAT CTAGCTCTGG CTCTGCGCGC
TCCGTCGGGT CGCCGAAGCT CACGCTCTTC GCCGCGCTGC TCGGTTTCGT GATGATCGCG
CTGGATGCTT CGGCGGTGAA CGTCGCGCTG CCGGCGGTCG GTCGCGGGCT CGGCGGGTCC
ACGGCGGGGT TGCAGTGGAT CGTTGATGCC TACACGCTGA TGTTCGCCGC GCTGCTGCTG
TCTGCCGGTG CGTTCTCGGA CCGGCTCGGC GCGAGTCGCT TGTATGGGGG TGGAGCCGCC
GCGTTCACGC TGGCTTCCGT GGCGTGCGGA TTGGCGCCGT CGCTCGGCTT CCTGATCGGG
GCGCGGTTGG TGCAGGGCAG TGCGGCGGCG TTGATGCTGC CGTCGTCGTT GGCGTTGGTG
CGGCAGGCGT TTCCGGACGC GTCGGCACGA GCGGCGGCGA TCGCGCAGTG GACGATGGCC
GGTGCGGCGT CCACGGCGGT CGGTCCGGTG CTCGGCGGTG CGCTCACCAG CTCGGTGAGC
TGGCGGTCGA TCTTCTTCCT GAACCTTCCG GTGGGCTTGG TCATCCTGGG CGCGCTGCGG
CGTACCGAGC GCTCGGTGCG GCGTCCGGCA CCGCTGGACC TGCCGGGTCA GCTCACTGCG
ATCGTCGGTC TGGCGGCCCT GACTTATGGC GTGATCTCCG GAGGCGCTTC GGGCTTCGGA
CGTCCGCAGG CGTGGGCGAG CGTGCTGCTG GCGCTGGTGT CGTTCGGCGC GTTCGGCGTG
GTCGAGCACC GCGCGACGGA GCCGATGCTG CCGCTGGGAC TGCTGCGCGA CCGGGTCGTG
GCGGTGTGCC TGGCGGTCGG CTTCGTGGTC AACGCGGCGT ACTATGGACT GATCTTCGTC
TTCGGCCTGT TCGCCCAGGA CATCCTGGGA CGCTCGGCAG TCGGCGCCGG CCTGGTGTTC
ATGCCGACCG CCATCCTGTG CACGATCACG AACCTGTTCT CCGCCCGCGC CGCCGCACGC
TGGGGCGCGC GCACACCGGT GCTCGTGGGA CAGCTCGCCT GCGCTGCGGG ACTGCTGGTC
CTACTGCTGG TGAACACCCA CACGAGCGCC CTGGAGTTGG CACTGTTGCT GCTGCCACTG
GCCGGCGGAC TCGGCTTCGC AGTGCCCTCA CTCACCGCGA TGATGCTCAG CGGCATCGCA
CCGGAGCGAG CCGGCCTGGC GGGAGGAGTG CTCAACTCCT TCCGGCAGAC CGGCGGCGCA
CTCGCGGTGG CAGGGTTCGG TGCGCTGGTC GCGCAGCACG GCGGGTTCGT GACCGGACTA
CATGTCAGCC TACTGATCTC GGTGGCACTG CTGGCGGTGA CGACGCTGGG CACGCTGGCG
CTGCCGAAGG TGGGGCGACG GTGA
 
Protein sequence
MPQTDSLARD AERVGSGAEA RFDSDARSGS GSGSSSGSAR SVGSPKLTLF AALLGFVMIA 
LDASAVNVAL PAVGRGLGGS TAGLQWIVDA YTLMFAALLL SAGAFSDRLG ASRLYGGGAA
AFTLASVACG LAPSLGFLIG ARLVQGSAAA LMLPSSLALV RQAFPDASAR AAAIAQWTMA
GAASTAVGPV LGGALTSSVS WRSIFFLNLP VGLVILGALR RTERSVRRPA PLDLPGQLTA
IVGLAALTYG VISGGASGFG RPQAWASVLL ALVSFGAFGV VEHRATEPML PLGLLRDRVV
AVCLAVGFVV NAAYYGLIFV FGLFAQDILG RSAVGAGLVF MPTAILCTIT NLFSARAAAR
WGARTPVLVG QLACAAGLLV LLLVNTHTSA LELALLLLPL AGGLGFAVPS LTAMMLSGIA
PERAGLAGGV LNSFRQTGGA LAVAGFGALV AQHGGFVTGL HVSLLISVAL LAVTTLGTLA
LPKVGRR