Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0401 |
Symbol | |
ID | 8331728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 447462 |
End bp | 448199 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644953567 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003111194 |
Protein GI | 256389630 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0464223 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.180866 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGAACG CGAAGACCGA GATGGCGAAG CCCCAGGTGG CAGCCCCGGC TGCGCCCCGT CCGCTGCGCC GGGACGCCGA GCGGAACCGG CAGTTGATCA TCGACACCGC CAAGACGGTC TTCGCGGCAC GCGGTCTGGA CGCGTCCCTC GATGAGGTGG CGCACGAAGC CGGCCTGGGC GTCGGAACCG TCTACCGCCG CTTCCCCAAC CGCGACGCGC TCATCGACGC GCTGTTCGAC GACATGCTCG CCTCGATCAC GCGCATCGTC GCGGAGTCGA TGGCGCTGCC GCGCGCCTGG GACGGGCTGG TCCACTTCAT GACCGCGATG CTGGAGTCGC AGGGCCGCGA CAAGGCGCTG CGGGACCTGA TGCTCTCGCG GCAGAAGTAC CTCGACCAGT GCGAGCTGGA CAGGGAGGAG GTCGTGCGGG AGACCGTGCA GCCGGCGCTG TACGACATCA TCGGTCGGGC CAAGGCGGAG GGCGACCTGC GCCCCGACGT GGTTCCGGCC GATGTGGGCG TGCTGTTGAT CTCGGCTGTC GGGGTCGTCG ACTTCACGGC TCCCGCCGAT CCCGAGGTGT GGCGGCGCCA TCTGGCGGTG CTGCTGGACG GCTTGCGCGC CCGCGCCGCC GGGGACACGA CGGTCCTCGC CCCGGCGCCG CTGGACGACG AGCAGCTCGA TCTTTGTATG AGCGGCTGGA AGTACGGGAC GCGGGAGACG CCGCGTCGGC GTTCTTAG
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Protein sequence | MTNAKTEMAK PQVAAPAAPR PLRRDAERNR QLIIDTAKTV FAARGLDASL DEVAHEAGLG VGTVYRRFPN RDALIDALFD DMLASITRIV AESMALPRAW DGLVHFMTAM LESQGRDKAL RDLMLSRQKY LDQCELDREE VVRETVQPAL YDIIGRAKAE GDLRPDVVPA DVGVLLISAV GVVDFTAPAD PEVWRRHLAV LLDGLRARAA GDTTVLAPAP LDDEQLDLCM SGWKYGTRET PRRRS
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