| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0327 |
|---|
| Symbol | |
|---|
| ID | 8331654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 366387 |
|---|
| End bp | 367406 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644953494 |
|---|
| Product | Helix-turn-helix type 11 domain protein |
|---|
| Protein accession | YP_003111121 |
|---|
| Protein GI | 256389557 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.489263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCACC CCGCCGGACG TGTGCTGACG CTGCTGGAGC TCCTGCAGTC CGGAGGCGTG
CGCACGGCGG CCGAAATCGC CGAACGGCTC GGGGTCGATG CGCGCACGGT GCGGCGGTAC
GTGGAGCAGC TGCTGGAGTT GGAGATCCCC GTGGAGTCCG TGCGCGGGCG TTACGGCGGC
TACCGGCTGG CTCGCGGCTT CCGGCTGCCG CCGCTGATGC TGGGTGACGA CGAGGCGCTG
GCGGTACTGC TGGGACTGCT CGCCGGGCGG CGGAGCGGGT TGACGGCGGC GCTCGGAGCG
GCGGGAGAGA CGGCGGGCGC CAAGATCCGG CGGGTGCTGC CCGCACGGTT GTCCGAGCGG
CTCCGGAGCG TGCTGGACAG TGTGGCGTTC ACCGGCGCAC CCGATCAGAG CGCTGCGCTG
GATGCCACGG TGTTGCTCAC GGTCGCCGAT GCCGTGGCGA ATCAGCGGCC GATCGCTGTG
CGATACACCG GCCGCGACGG TGTTCGCGGT GACCGGACAC TGCATCCCTA TGCGATCGTG
AGCCATGGGG AGCGCTGGTA TGTCAGGGCT CTGGATCCGG CAATCGGCGA GGAGCGCACG
TTTCGGCTTG ATCGGATCGA CGGGGCAAGG GCGCTGCCGG GTTCTTTCGA GGCGCCGACG
ATGGACGATG ATCCGGGGCA GAGCTTGCTC GCCGGGTTCG CGGCGGCGGA CTACCGGTAC
GAAGTCGCGA TCCGAGTACA CGGGACGGTC GAGCAGATCC GGGCGCGGTT TCCGGTGAGT
GTGGCGACAA TTCAGCCGCT CAGCGATGCC AACGGCAATG GCGATGGCAA CGGCAACGGC
AACGAGGCAC AGACCCCATG GCACCGCCTC GCCATCCGCG CCGAACACCT CGACTGGATC
CCGCCGACGT TGGCCGCACT CGACCTGCCC TTCGAGATCG AAGACCCGGA CGAACTCCGC
GATCTTGTCA TCGCCTTTGC CGACCGCCTG GCGACGAGAG CACGCGGCGG ACTCGAATAG
|
|---|
| Protein sequence | MNHPAGRVLT LLELLQSGGV RTAAEIAERL GVDARTVRRY VEQLLELEIP VESVRGRYGG
YRLARGFRLP PLMLGDDEAL AVLLGLLAGR RSGLTAALGA AGETAGAKIR RVLPARLSER
LRSVLDSVAF TGAPDQSAAL DATVLLTVAD AVANQRPIAV RYTGRDGVRG DRTLHPYAIV
SHGERWYVRA LDPAIGEERT FRLDRIDGAR ALPGSFEAPT MDDDPGQSLL AGFAAADYRY
EVAIRVHGTV EQIRARFPVS VATIQPLSDA NGNGDGNGNG NEAQTPWHRL AIRAEHLDWI
PPTLAALDLP FEIEDPDELR DLVIAFADRL ATRARGGLE
|
|---|
| |