| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0287 |
|---|
| Symbol | |
|---|
| ID | 8331614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 324880 |
|---|
| End bp | 325734 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644953454 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_003111081 |
|---|
| Protein GI | 256389517 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCGA TGACCGTGGC CGACTCCGGT CTGGCCGACA CCGGCGCCGA CACCCGCTCG
CACGCCTGGG TCCACGCCCG GATCATGCTG CGCCGCAACC TGCGCCACCT GCAGCGCTAC
CCGTCGCTGA CCCTCATGGT CACCTTGATG CCGCTGGTCT TCCTGCTCCT GTTCGTCTAC
GTCTTCGGCG GGACGCTCGG GTCCGGGCTC GGCAGCCTCA CCCCGGCCGG CGTGCACGGC
GGCCGTGCGG CGTACGCCGC CTACGTCGCC CCGGCGATCA TCGTGATGGC GGTGGCCGCG
GCGGCGCAGG GCACGGCGAT CGCCGTCGCC CAGGACATGA CCGAGGGCAT CATCGCCCGC
TTCCGGACCA TGGCCGTCGC GCGGTCGTCG GTGCTGACCG GGCACGTCGT CGGCGCCGCG
ATCCAGACCA TGGCCGGTGT CGCGGTCGTG GTCGGCGCCG CGCTCGCGGT GGGCTTCCGC
CCGCACGCGA ACGCGGCCGA GTGGTTCGCC GCGCTCGGCG TGGTCCTGCT GCTGACCTTC
GCCGTCACCT GGCTGTGCGT CGGGCTCGGG CTGTCGGCCA AGAGCGTCGA GACCGCGAGC
AACTCGCCGA TGTTCCTCCT GCTGCTGCCC TTCCTGAGCA GCGGTTTCGT TCCGACCGAC
TCGCTGCCGA CGGGGATGCG CTGGTTCTCC GAGTACGAGC CCTTCACGCC GGTGACCGAG
ACCCTGCGCG GGCTGCTGAC CGGGACGAGG ATCGGCGGCG ACCTGGTCGT CACGCTGGCC
TGGTGCCTCG GCGTCGCGGT GTTGTCCTAC GCCTGGTCGC GACGGCTATA TGAGCGCGAG
CCCAAGCAGA GTTGA
|
|---|
| Protein sequence | MSAMTVADSG LADTGADTRS HAWVHARIML RRNLRHLQRY PSLTLMVTLM PLVFLLLFVY
VFGGTLGSGL GSLTPAGVHG GRAAYAAYVA PAIIVMAVAA AAQGTAIAVA QDMTEGIIAR
FRTMAVARSS VLTGHVVGAA IQTMAGVAVV VGAALAVGFR PHANAAEWFA ALGVVLLLTF
AVTWLCVGLG LSAKSVETAS NSPMFLLLLP FLSSGFVPTD SLPTGMRWFS EYEPFTPVTE
TLRGLLTGTR IGGDLVVTLA WCLGVAVLSY AWSRRLYERE PKQS
|
|---|
| |