Gene Caci_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0106 
Symbol 
ID8331431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp109615 
End bp110286 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content71% 
IMG OID644953273 
Productnitroreductase 
Protein accessionYP_003110902 
Protein GI256389338 
COG category[C] Energy production and conversion 
COG ID[COG0778] Nitroreductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0309697 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.07675 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATTT ACGAAGCGCT CTACACCACC CGGGCCATGC GCCGGGTCAA GCCCGACCCG 
ATCCCGGAGT CCGTCCAGGC CCGCATCCTG GACGCCGCGA TCCGCGCGCC CTCCGGCGGC
AACGGGCAGA ACTGGCGGTT CCTGCTCCTC GACGACCCCG AGAAGAAGAA GCTCCTCGGC
CCGCTCTACC GCGACGCCCT CGACCAGCTC TACACGACGG TCTACGCCCC GATGCTGGCC
GCGATCGCCG CCGACCCGGA CAGCCCCGAG TCGCGCCAGA TGGCGAAGGT CACGAAGTCC
TCCCGGTGGC TCGGCGAGAA CTTCGAGCAG GTCCCGCTGT TCCTGTTCGC GTTCGTCCAG
CGCGACCGCT CCGGCGGCTC GATCTTCCCG GCGGTCTGGA ACGCGCAGCT GGCCGCCCGC
GCCCAAGGCG TCGGCAGCGC GCTGACCTCG ATCCTCGGCG GCTTCCATGA CCAAGAGGTC
AAGGAGATCC TCGGCGTGCC GGCCGAGGAG AAGTGGACCC AGTCCTGCTG CGTGTCCTTC
GGCTACCCGA CCGGCCGCTG GGGCGTCGCC CCGCGCCGTC CCGCGCACGA GGTCGCGTAC
CGGAACGGCT GGGGCGAGCC GGTGGGCTTC ACCGTCGACG AGCCGCTGTG GCAGCCCTCC
CCCGAGTCCT GA
 
Protein sequence
MDIYEALYTT RAMRRVKPDP IPESVQARIL DAAIRAPSGG NGQNWRFLLL DDPEKKKLLG 
PLYRDALDQL YTTVYAPMLA AIAADPDSPE SRQMAKVTKS SRWLGENFEQ VPLFLFAFVQ
RDRSGGSIFP AVWNAQLAAR AQGVGSALTS ILGGFHDQEV KEILGVPAEE KWTQSCCVSF
GYPTGRWGVA PRRPAHEVAY RNGWGEPVGF TVDEPLWQPS PES