Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0044 |
Symbol | |
ID | 8331369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 45480 |
End bp | 46550 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644953211 |
Product | Rhomboid family protein |
Protein accession | YP_003110840 |
Protein GI | 256389276 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCAG GCAGCCCAGG CAGCCCCTCC GTGCCAGCCA CCGAACTCCC GGCGTGCTAC CGGCATCCGG GCCGCGAGGC GCAGATCCGC TGCACCCGCT GCGATCGCCG GATCTGCCCG GAGTGCATGG TCCCGGCCTC GGTCGGGTTC CAGTGCCCGG AGTGCGTGCG CGGCGGCAAC CAGGAGGTGC GCAAGGCGCG GTCCCCGTTC GGGGCGGTGC TGCGCCCCCG GGTGGTCCCG GTCGTCACCT ACAGCCTGAT CGCGCTGAAC TTCGTGATGT TCGGCCTGCA GCACATCGTC GGCACCTCGC AGGTCGGCGC GGCCGGCGGC GGGGTGTTCC AGGTGAACAC CCTGGACATG CGGCTGGAGC TGATCGCCAA GGGCACCTGG GTCGACGGCC AGCCGATAGG CGTGGCCAAC GGCGAGTGGT ACCGCCTGGT CACCTCGATG TTCCTGCACG CGAACCTGAT CCACATCGCC TCGAACATGA TCTCGCTGTT CTTCATCGGC CCGATGCTGG AGGCGATGCT CGGCCGGCTG CGGTTCGTGC TGGTCTACCT GATCGGCGGC CTGGCCGGGG CGGTCACGTC CTACTGGTTC ATGACCCCGC TGAGCCCGGC GAGCCTGGGC GCCTCGGGCG CCATCTCGGC GGTCTTCGGC TGCCTGGTGG TGATCGGGCT GCGGCGCAAG ATCCTGGACC CCGGGATGAT CGCCGTGGTG CTGGTGATCA ACATCGTGAT CCCGCTGCAG AACACCAACA TCGACTGGCG CGACCATGTC GGCGGCGTGG TGGCCGGGGC GCTGATCGGC GCGGTCTACG CCTTCGCCCC GGAGCTCATC GGCGCGCTCG GCAAGGCCAG GGCGCCACGC GAGCAGCAGG TACGGCTGCT CAACTGGCTC GGCTTCGGCA CGATGGCGCT GGTCCTGGCC CTGGCGATCG GCGGCACGGC CGTGCACACC GCCCACCTGA ACGACCCGGC GAACCGGACG CGCACCGTCG ACGGCGCCGT GTACTCACCC GGCCCGACCA GGGTCGTCAC CGACGTTCCG ACAAGTTATC CACAGGCCTG A
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Protein sequence | MPPGSPGSPS VPATELPACY RHPGREAQIR CTRCDRRICP ECMVPASVGF QCPECVRGGN QEVRKARSPF GAVLRPRVVP VVTYSLIALN FVMFGLQHIV GTSQVGAAGG GVFQVNTLDM RLELIAKGTW VDGQPIGVAN GEWYRLVTSM FLHANLIHIA SNMISLFFIG PMLEAMLGRL RFVLVYLIGG LAGAVTSYWF MTPLSPASLG ASGAISAVFG CLVVIGLRRK ILDPGMIAVV LVINIVIPLQ NTNIDWRDHV GGVVAGALIG AVYAFAPELI GALGKARAPR EQQVRLLNWL GFGTMALVLA LAIGGTAVHT AHLNDPANRT RTVDGAVYSP GPTRVVTDVP TSYPQA
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