| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0002 |
|---|
| Symbol | |
|---|
| ID | 8331325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2834 |
|---|
| End bp | 4024 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644953167 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_003110798 |
|---|
| Protein GI | 256389234 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0135269 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.401999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTTCC GGGTGGAGCG CGACGTCCTT TCCGAGGCCG TGGCATGGAC TGCGCGGTCC
CTGCCCAGCC GCCCGGCGGC CCCGGTCCTG GCCGGGCTGG TCTTCGAGGC CGTGGAGGGA
GAAGGCGGCG AGGACCACGG CTCGGTCACG CTGTCCGGCT TCGACTACGA GGTCTCCTCC
CGGGCCCAGA TCGGTGCCGA CGTCACCGAG CCGGGCCGGA TCCTGATCCA CGGCAAGCTG
CTGGCGGACA TCGCCAAGTC GCTGCCGAAC CGCCCCGTGG AGTTCTCCAC CGAGGGCTCG
AAAGTTCTCC TCAGCTGTGG ATCCAGCCGC TTCACCCTGC AGACCCTGCC GGTGGAGGAC
TACCCGGCGC TGCCGACCAT GCCGACCGCG ACCGGCGCCG TCACCGCCTC CGGCCTGGCC
GGGGCGGTCT CCCAGGTGGC CATCGCCGCC GGGCGCGACG ACACCATCCC GATGCTCACC
GGCATCCGCG TGGAGATCGA GGGCGAGAAG ATCACCCTGG TCGCCACCGA CCGGTTCCGG
CTGGCCGTCC GCGAGCTCCA GTGGAAGCCG GAGCAGGACG ACATGTCCGC GACCGCGCTG
ATCCCCTCCA AGGTCCTGTC GGACACCGCG AAGGCGCTCA CCGGCGGCGA CTGGGTCTCC
CTGGCGCTGT CCGGCGGCGA CGCCGGCGAG GGTCTGATCG GTTTCGAGTC CGGCGAAGGT
ACCTCCGGCA AGGCCAAGGG CTCGCGGCGG ATGACGTCCC GCCTGCTGTC CGGGGAGTTC
GTGAAGTACC GCTCGCTGTT CCCGAACGAG TACAACATCA CCGCGACCGT CGAGACCGCG
CCGTTCCTGG AGGCCGCCAA GCGCGTGTCC CTGGTGGCCG ACCGCACCTC GCCGATCAAG
CTGGCCTTCA CCCAGGGCGA GGTCACCCTG GAGGCCGGCG CGGGCGACGA GGCGCAGGCC
TCCGAGGCCA TGGACGCGGT CCTGGACGGC GAGGACATCA GCGTCTCGTT CAATCCCAGC
TTCCTGCTCG ACGGCCTGCA GGTGATCGAC ACCCAGTACG CGCAGCTGTC GTTCACCGTC
GCCTCCAAGC CCGCGGTGCT CATGGGCCGC CCGGCGCTGG ACGCCCCGGC GCAGGAGGAA
TTCCGTTACC TGATGATGCC GCTCCGAGTT CCTGGTCAGT CCGCGGGCTG A
|
|---|
| Protein sequence | MKFRVERDVL SEAVAWTARS LPSRPAAPVL AGLVFEAVEG EGGEDHGSVT LSGFDYEVSS
RAQIGADVTE PGRILIHGKL LADIAKSLPN RPVEFSTEGS KVLLSCGSSR FTLQTLPVED
YPALPTMPTA TGAVTASGLA GAVSQVAIAA GRDDTIPMLT GIRVEIEGEK ITLVATDRFR
LAVRELQWKP EQDDMSATAL IPSKVLSDTA KALTGGDWVS LALSGGDAGE GLIGFESGEG
TSGKAKGSRR MTSRLLSGEF VKYRSLFPNE YNITATVETA PFLEAAKRVS LVADRTSPIK
LAFTQGEVTL EAGAGDEAQA SEAMDAVLDG EDISVSFNPS FLLDGLQVID TQYAQLSFTV
ASKPAVLMGR PALDAPAQEE FRYLMMPLRV PGQSAG
|
|---|
| |