| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_2006 |
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| Symbol | |
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| ID | 8324106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 2122293 |
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| End bp | 2125877 |
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| Gene Length | 3585 bp |
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| Protein Length | 1194 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644953131 |
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| Product | cellulose-binding family II |
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| Protein accession | YP_003110581 |
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| Protein GI | 256372757 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG5297] Cellobiohydrolase A (1,4-beta-cellobiosidase A) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0781083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTCTTG CTCTTGGCCT CGTTGCCGGT GGCATCGCGA GCGTGTTGGG AGCACAGACA
GCGCTGACGG CAGCCGCGAC CGCGTTCCCG GCGACACCTC CTGGCGCGGT GAGCGGTCCG
TTCCAGGTCC GTGGCAACGT CATCGTCGAC GCAGCCGGAG CGCCCGTGTA TCTCCACGGC
GTGGACTGGC CGAGCCTCGT GTGGAATCCG GATGGCCAGT GGGCCAACGC GAGCCAGTCG
GGGGTCAATC CGAATGAGTT CGTCGCGATG GCCAAGCAGT GGGGTGCGAA CGCCGTCCGT
ATCCCGGTTA ACGAAGCCTT CTGGCTGAAG GGTTCGCCGG AGTACGCCCC TGGCTACATC
GCAACCGTCG AGTCGGTCGT GTCGCTCGTC GAGCACAACG GCATGATCCC GATCATCGAT
CTTCACCGGG TGATCGGGGC CGACTCGGTG ACCGCGACAC CCTCGGCCAA CCCCGCGTGC
GCCCCGGACG TGCCCAGTGA GACCTTCTGG CAGCAGGCCG CCTCGATCTT CAAGGGTGAT
CCGAACGTCA TGTTCGAGCT CTACAACGAG CCCCACGACA TCCCATGGTC CGTGTGGCGC
AACGGCGGGG CCATCACCTG TGCCGATACC GGCCAGTCCT ACACGGCCGT TGGCGAGCAG
CAGCTCCTCG ATATCGTGCG CGCGACCGGC GCCGAGAACG TGGTGATCGT CGACGGCAAT
CACTGGGCAG GCAACCTCGC GCCGATCGCC GAGTGGGGCC TCGCTGGTGC GAATGTCGCC
TATGGCTTCC ATCTCTACGT GCACGAGAGC ACGCCCACCA CCCCGTCGCA ATGGAGCGCA
TCGCTCGGAA CCGTGCCGTC GCTCGCCCCG GTCGTCGCGA CGGAGTTCGG CGTGCTGGGG
TGTGCGACCC CGTATCCGAC CTCCACCGAG CAGTCGATCG TCGACTACCT CGAGCAGCAC
GGCATCGGTT GGACCGCGTG GGGCTGGTTC GCCGGACCCA ACGGCGGCAG CTGCAGTTTT
CCGTCGCTGA TCGCCAACGA GCAGGGAACC CCCTTCGACG GAGGGGTCGT GGTCCAGCAG
CAGAGCCTGG GCCTTGCCAG TGGTGCGGTG CAGGCGAACG AGCCCGCCGC GCCCTCGGTG
ACGACGGCGT CGGGCTCGAC GGTCTCGGTG CCCGCGCTCG GAGCGCTCGG TCAGGCCTAT
GCGGTCGTCG ACGAGACGGC GGGCTCCGGG TCGCTCGCTC TCACGCCCGT GGGGGCCGCG
TCCCCGGAGA CGATCGCACT GAGTACGGGG CAGAACCTCG TGCCGCTCGT CCAACCGGGC
TCGGCCGTCG AGACGAGCAC CCCCGTGGCG CTCACCGTGC CTCAGGGTGC AACCCTCACG
GGTGTGATCG ACGAGCCTTC GATCAGCGGC GTCGCGACGC CCATCGCCAT GGCGGGCACG
TCGGGTGCTG CGGCCTGCAC GCCCCAGGTG CGATGGGGGA ACGCCACGAT CACGCAGACG
AGTGCCGGTA TCAGCGTCAC CGCAACGAGC GGCTATCCGG CTGTCGAGCT CGTGGGGCCG
AGCTGTGCGC TGAGCGGTGC CGACGGCTAC ACCGTGTCGG TGAGCTCACC CACCGGGGAT
GCGCAGGTGA CGCCGTTCGC ACTGTCCTCC TCGTACCACG CCTCGTTCCT GCCTGACGCA
ACCGTGGGCC AGCAGGCCAC GACCCTCGCG CTCGGTCCGG GGGTCGGAAC CTCGCCCGTC
CTCGGTCTCC AGCTCGATGC GGCTACCAGT CCCGAGACCA TCGTGATCTC GAACCTGACC
GGTTGGGCCC CGACGACCAC CGTGGCAGCC TCGACGATGC AGGCAAGCAC GGTCTCCTCG
TCCACCTCGA CGACTTCGTC GACCTCGACG GCCTTCGCGC CCTACGTGGA CATGACCCTG
CCGCCGACCG GCACCCTCGC CCAGCTCGGC TCCGAGTCCG GCGCCAAGGC GCTCACGCTG
GCGTTCATTG TGAGCTCGAA GGGCACCTGC TATCCGAGCT GGGGCAACTA CTTCCCGGTG
GGCCAGAACA ACGGCCTCTT CCGCAACGAG ATCGCTGCCT ACCAAGCCGA GGGTGGCACG
CCCATCGTCT CCTTCGGCGG TGAGATCAAC CAGGAGCTCG CCCAGGTGTG CTCCTCGCCC
CAGGCGCTCG CCCAAGCCTA CGAGACCGTC ATCAACACCT ACCACGTCTA CAACCTCGAC
TTCGATATCG AGGGTTCGGA CCTGAACGAC CAGGCCGCTG TGAACCTGCG CAACCAGGCC
CTCGCCCTGG TCCAGCAACA AGAAGCAGCG CAAGGCCACC CAGTGAGCGT CTCCTACACG
CTGCCGGTTA TGCCGTGGGG TCTGCTCGCG AACTCGCTGT ATCTGCTGAA CTCGGCGAAG
ACCTACGGTG TCGACGTGTC CAACGTCAAC GTCATGGCGA TGGACTACGG CATCCCCCAG
GCCCAAGGTG CGATGGGCAC GATGGCGATC GAGGCCGCCC AGGCCACCGA GCAACAGCTC
GCCTCGATCT GGTCGAACCT GTCCACCGCC CAGCTCTGGC AGATGGTCGG CGTGACCCCG
ATGATAGGGC AGAACGACCT CTCGGGTGAG ATCTTCACCA CCCAAGACGC CCAGCAGCTC
GGGGCCTTCG CCGAGCAGGT TGGCCTCGGC AGGCTCTCGA TGTGGGAGAT CCACCGCGAC
GTCGAGTGCG CGAACAACGC CGACGAGGAC TCGAACTACT GCTCCGGCAC GACCGAGACC
CCGTGGCAGT TCTCGCAGAT CTTCGAGCAG GCCGCCGGTG GGTCACTGCC CGCTCCGTCG
GATCCCACGC CACCGCCGTC GGATCCCACG CCACCGCCGT CTAACCCGAC GCCCGCTCCC
ACCAGCCCGA CGACGCCTGG CCCGATCTCG TTCTCCTCGG GCTCCTTGGC GGGCACCGCG
ACGGTGACCT CCACGTGGTG GGGTGGTGGT CAGGTGGACG TGACCATCAA GAACACCGGC
ACGGCTCCGG TCTCGGGATG GACCCTCGGG TTCACGGTGC CCTCGGGTGA GAGCATCGGG
AGCCTCTGGA ACGGCACGGT CTCCGGTTCG ACCGGCACCG TCACCGTGAC GCCGGCGAGC
TGGAACGGCA CCATCGAGCC GGGCGCGAGC ATCCAGGTGG GCTTCACGCT CAACGGTGGG
CCCGAGAACG GCGTGTTCCC CTCGAGCTAT GAACTCAGTG GGTCGTCGAC CGCGAGTGAC
CCTGCGCCGA CGACGCCGAC ACCGACGCCG ACCTCGTCCG GCCAGCTCAC CGCCACCGCG
ACGGTGACCT CGACCTGGTG GGGTGGTGGT CAGGTGGACG TGACCATCAA GAACACCGGC
ACGGCGCCGG TGTCGGGATG GACCCTCGGG TTCACGGTGC CCTCGGGTGA GAGCATCGGG
AGCCTCTGGA ACGGCACGGT CTCCGGTTCG ACCGGCACCG TCACCGTGAC GCCGGCGAGC
TGGAACGGCA CCATCGAGCC GGGCGCGAGC ATCCAGGTGG GCTTCACCAT CCAGTCATCG
GCGAAGTCTG CGACGCTGCC GACGACGGTC AGCGTCAGCG CCTAG
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| Protein sequence | MALALGLVAG GIASVLGAQT ALTAAATAFP ATPPGAVSGP FQVRGNVIVD AAGAPVYLHG
VDWPSLVWNP DGQWANASQS GVNPNEFVAM AKQWGANAVR IPVNEAFWLK GSPEYAPGYI
ATVESVVSLV EHNGMIPIID LHRVIGADSV TATPSANPAC APDVPSETFW QQAASIFKGD
PNVMFELYNE PHDIPWSVWR NGGAITCADT GQSYTAVGEQ QLLDIVRATG AENVVIVDGN
HWAGNLAPIA EWGLAGANVA YGFHLYVHES TPTTPSQWSA SLGTVPSLAP VVATEFGVLG
CATPYPTSTE QSIVDYLEQH GIGWTAWGWF AGPNGGSCSF PSLIANEQGT PFDGGVVVQQ
QSLGLASGAV QANEPAAPSV TTASGSTVSV PALGALGQAY AVVDETAGSG SLALTPVGAA
SPETIALSTG QNLVPLVQPG SAVETSTPVA LTVPQGATLT GVIDEPSISG VATPIAMAGT
SGAAACTPQV RWGNATITQT SAGISVTATS GYPAVELVGP SCALSGADGY TVSVSSPTGD
AQVTPFALSS SYHASFLPDA TVGQQATTLA LGPGVGTSPV LGLQLDAATS PETIVISNLT
GWAPTTTVAA STMQASTVSS STSTTSSTST AFAPYVDMTL PPTGTLAQLG SESGAKALTL
AFIVSSKGTC YPSWGNYFPV GQNNGLFRNE IAAYQAEGGT PIVSFGGEIN QELAQVCSSP
QALAQAYETV INTYHVYNLD FDIEGSDLND QAAVNLRNQA LALVQQQEAA QGHPVSVSYT
LPVMPWGLLA NSLYLLNSAK TYGVDVSNVN VMAMDYGIPQ AQGAMGTMAI EAAQATEQQL
ASIWSNLSTA QLWQMVGVTP MIGQNDLSGE IFTTQDAQQL GAFAEQVGLG RLSMWEIHRD
VECANNADED SNYCSGTTET PWQFSQIFEQ AAGGSLPAPS DPTPPPSDPT PPPSNPTPAP
TSPTTPGPIS FSSGSLAGTA TVTSTWWGGG QVDVTIKNTG TAPVSGWTLG FTVPSGESIG
SLWNGTVSGS TGTVTVTPAS WNGTIEPGAS IQVGFTLNGG PENGVFPSSY ELSGSSTASD
PAPTTPTPTP TSSGQLTATA TVTSTWWGGG QVDVTIKNTG TAPVSGWTLG FTVPSGESIG
SLWNGTVSGS TGTVTVTPAS WNGTIEPGAS IQVGFTIQSS AKSATLPTTV SVSA
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