| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1987 |
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| Symbol | |
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| ID | 8324087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 2096121 |
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| End bp | 2097578 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644953113 |
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| Product | glutamate synthase, NADH/NADPH, small subunit |
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| Protein accession | YP_003110563 |
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| Protein GI | 256372739 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.107233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGCTG ATCCGCAGGG ATTTCTCACC TTCGAGCGAG AGGGTCCGCC CAAGCGACCC
GTAGCGCTTC GGATCCGCGA CTGGCACGAG GTGACCGACC GGTTCGACCC CGCAACCCTC
GAGCGCCAGG CGCGCCGATG CATGGACTGT GGCATCCCGT TCTGTCACCA TGGGTGCCCA
CTCGGGAACG TGATCCCCGA GTTCAACGAG CTCGCCGGCC GCGGGCAGCT CGAGCGCGCG
GCAGAGCGAC TGCTCGCGAC GAACAACTTC CCCGAGTTCA CTGGTCGGCT CTGCCCGGCG
CCGTGCGAGG CGGCGTGTGT GCTCGGGATC AATCGGGATC CGGTCTCGAT CGAGGCCATC
GAGCGAACCC TGGCCGACGA GGCCGCAGAG CGCGGCGTCG ATCGACCGAT CGTGGCCCAG
CGTCGCAGCG GTCGTCGGGT GGTCGTGGTG GGTTCGGGCC CTGCTGGTCT CGCAGCCGCG
CAGCAGCTCG CGCGCGCCGG GCACGAGGTC GAGCTGCTCG AGCGCCACGA TCGTGCAGGC
GGTCTGCTGC GCTATGGCAT CCCAGAGTTC AAGCTCGAGA AGCACCTCGT CGATCGGCGT
CTCGAGCAGC TCGTCACCGA AGGCGTCACG GTACGCACCG GCGTGGGCGT CGGTACCGAC
GTCACCTTGA GCGAGCTCGT CGCCGAGGCC GACGCTGTCG TGCTCGCGCT CGGCTCCACC
CGTCCTCGCG ATCTCGTGGT CGAGGGACGC GCGGGAGCCG GGGTGCACTT CGCGATGGAC
TACCTGCGCG CGGCCAACCT CGAGGCGCTC GGGACCCCGA TCGTCGGCGC ACCGAGCGCG
CGTGACGCGC GTGTGGTGAT CGTCGGCGGC GGCGATACCG GGGCGGATTG TTTGGGCACG
GCGCACCGCC AAGGGGCAGC GCACGTCCTG CAGCTCGAGA TCCTGCCAGC GCCGCCGCGA
GAGCGTTCGT CTCGACACCC CTGGCCGACG TACCCGGTGC TGCTGCGGAC CTCGAGCGCG
CACGAGGAGG GCGGCGATCG CCGCTGGGCG CGTCGCACGG TGCGCATCGA GCGCGGCGAG
GACGGACGAG TCCTCGGGCT CACGACCGAA GCCGTCCAGC TCGTCGACGG CAACCTGGTG
GCGGTCCCCG GGACCGACGA GCTCATCGAG GCCGACCTCG TGCTGCTCGC CATGGGCTTC
GTCGGTCCGG AACTCGACCG CATCGACCCC GAGCGCGCGC TCGCTCGGAC GCCTCAGGGG
ACCATCGCGA CCGACGACCG CTTCGCGACC TCGATTCCGG GGGTGTTCGC AGCTGGCGAT
GCGAGGCGCG GGCAGTCGCT CGTGGTGTGG GCCATCGCCG AGGGACGTTC GGTCGCGCAC
GACGTCGATG CGTGGCTGAT GGGCGCAAGC GACTTGCCAC GGCCGATCGA GCCCTCGACG
CGCGCGCTCG CCGTCTAA
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| Protein sequence | MAADPQGFLT FEREGPPKRP VALRIRDWHE VTDRFDPATL ERQARRCMDC GIPFCHHGCP
LGNVIPEFNE LAGRGQLERA AERLLATNNF PEFTGRLCPA PCEAACVLGI NRDPVSIEAI
ERTLADEAAE RGVDRPIVAQ RRSGRRVVVV GSGPAGLAAA QQLARAGHEV ELLERHDRAG
GLLRYGIPEF KLEKHLVDRR LEQLVTEGVT VRTGVGVGTD VTLSELVAEA DAVVLALGST
RPRDLVVEGR AGAGVHFAMD YLRAANLEAL GTPIVGAPSA RDARVVIVGG GDTGADCLGT
AHRQGAAHVL QLEILPAPPR ERSSRHPWPT YPVLLRTSSA HEEGGDRRWA RRTVRIERGE
DGRVLGLTTE AVQLVDGNLV AVPGTDELIE ADLVLLAMGF VGPELDRIDP ERALARTPQG
TIATDDRFAT SIPGVFAAGD ARRGQSLVVW AIAEGRSVAH DVDAWLMGAS DLPRPIEPST
RALAV
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