Gene Afer_1960 details

Gene Information

• Locus tag: Afer_1960
• ID: 8324060
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 2056798
• End bp: 2058639
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644953087
• Product: chaperone protein DnaK
• Protein accession: YP_003110537
• Protein GI: 256372713
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR02350] chaperone protein DnaK

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.638258
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAAGG CAGTCGGCAT CGATCTTGGC ACCACGAACT CCGTGGTCGC CGTCCTCGAA 
GGTGGCGACC CGGTCGTCAT TCCCAACGCG GAGGGTGGAC GCACCACCCC GTCCGTCGTG 
GCCTTCGCCA AGACCGGTGA GGTGCTCGTC GGCGAGGTCG CCAAGCGCCA AGCCATCACC 
AACCCCGATC GGACCATCCG CTCGGTGAAG CGGCACATGG GGACCGATTG GACCATCGAC 
ATCGATGGGA AGCACTACAC GCCCCAGGAG ATCTCCGCGC GGATCCTCGC CAAGCTGAAG 
CGAGATGCCG AGGCCTACCT GGGCGACACC ATCACCCAGG CGGTGATCAC CGTCCCTGCC 
TACTTCGACG ACGCGCAGCG CACGGCAACG AAGGAGGCCG GACAGATCGC CGGCCTCGAG 
GTTCTGCGGA TCATCAACGA GCCGACGGCT GCGGCCCTCG CCTACGGCCT CGACAAGGAA 
GCCGAGGACC AGACGGTGCT CGTCTTCGAC CTCGGCGGTG GCACCTTCGA CGTCTCGATC 
CTCGAGATCG GCGAGGGCGT CTTCGAGGTC AAGTCGACCG CAGGTAACAC CCACCTCGGT 
GGCGACGACT GGGACCAGCG CATCATCGAC TGGCTGGTCG CGAGCTTCAA GAACCAAGAG 
GGCGTCGACC TCTCGACCGA CAAGATGGCG ATGCAGCGTC TCAAGGAGGC GGCCGAGAAG 
GCCAAGATCG AGCTCTCCGC GTCGCTGGAG ACCATGGTCA ACCTGCCGTT CATCACGGCG 
ACGACCGAGG GGCCGAAGCA CCTCGAGATG AAGCTCACCC GAGCAAAGTT CCAAGAGCTC 
ACCGCCGATC TCGTCGAGGC GTGCCGCGCA CCGTTCGAGC AGGCCATTCG TGATGCGAAC 
CTGTCGGTCG GCGACATCGA CCACGTGGTC CTCGTCGGTG GCTCGACCCG GATGCCCGCC 
ATCCAGGAGC TCGTCACCAA GCTCACCGGC AAGGAGCCGC ACCGCGGCGT CAACCCGGAC 
GAGGTGGTGG CCGTCGGTGC GGCGATCCAG GCCGGCGTGC TCAAGGGCGA GGTGAAGGAC 
GTCCTGTTGC TCGACGTCAC CCCGCTGTCG CTCGGCATCG AGACCAAGGG CGGCGTGATG 
ACCAAGCTCA TCGAGCGCAA CACGACCATC CCCACCAAGC GCACCGAGGT CTTCACCACG 
GCCGACGACA ACCAGCCCTC GGTCGAGATC CACGTGCTCC AGGGCGAGCG CGAGATGGCG 
GCCTACAACA AGACGCTGGG CCGGTTCCAG CTCGTCGGGA TCCCGCCAGC GCCGCGTGGT 
GTGCCGCAGA TCGAGGTGAC CTTCGACATC GACGCGAACG GCATCGTCCA CGTGTCGGCG 
AAGGACCGCG CCACCGGCAA GGAGCAGTCG ATCACGATCT CGGGCACGAC GTCGCTCGGC 
AAGGACGAGA TCGAGCGCAT GGTGCGCGAC GCCGAGGCCC ACGAGGCCGA GGACCGTCGC 
CGGCGCGAGG AGGCCGAGGT CCGCAACAAC GCCGACACCC TCGTGTACCA GACCGAGAAG 
CTCCTCGCGG AACAGGGCGA CAAGCTCTCG GGCCCCGAGA AGGATCGGGT CACCGAGGCC 
TTGGGGCAGC TGAAGCTCGC GCTCGACGGC ACGGACATCG CCGCGATCCG CAGCGCCACC 
GACGCGGTGG TCTCGGCGTC CCAGAGCTTC ACCCAGCGGC TCTACGAGGA GGCCTCGCGC 
AGCGCCCAGA GCGCCGATGC CAGCGGCCAG TCGAGCACCT CGTCGGAGGA TGAGGTGGTC 
GATGCCGAGA TCGTCGACGA GTCTGGAGAG CAGAGGTCCT GA 

 

Protein sequence

MPKAVGIDLG TTNSVVAVLE GGDPVVIPNA EGGRTTPSVV AFAKTGEVLV GEVAKRQAIT 
NPDRTIRSVK RHMGTDWTID IDGKHYTPQE ISARILAKLK RDAEAYLGDT ITQAVITVPA 
YFDDAQRTAT KEAGQIAGLE VLRIINEPTA AALAYGLDKE AEDQTVLVFD LGGGTFDVSI 
LEIGEGVFEV KSTAGNTHLG GDDWDQRIID WLVASFKNQE GVDLSTDKMA MQRLKEAAEK 
AKIELSASLE TMVNLPFITA TTEGPKHLEM KLTRAKFQEL TADLVEACRA PFEQAIRDAN 
LSVGDIDHVV LVGGSTRMPA IQELVTKLTG KEPHRGVNPD EVVAVGAAIQ AGVLKGEVKD 
VLLLDVTPLS LGIETKGGVM TKLIERNTTI PTKRTEVFTT ADDNQPSVEI HVLQGEREMA 
AYNKTLGRFQ LVGIPPAPRG VPQIEVTFDI DANGIVHVSA KDRATGKEQS ITISGTTSLG 
KDEIERMVRD AEAHEAEDRR RREEAEVRNN ADTLVYQTEK LLAEQGDKLS GPEKDRVTEA 
LGQLKLALDG TDIAAIRSAT DAVVSASQSF TQRLYEEASR SAQSADASGQ SSTSSEDEVV 
DAEIVDESGE QRS