Gene Afer_1949 details

Gene Information

• Locus tag: Afer_1949
• ID: 8324049
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 2044208
• End bp: 2046046
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644953076
• Product: General secretory system II protein E domain protein
• Protein accession: YP_003110526
• Protein GI: 256372702
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGAGCC CGCGGCTTCG CGAGCGCGCA GCTTCGCCAC CGCTCGGCGC CGCGCTCGTG 
GCCGCGGGCC TGCTCGACGA GCACGACCTC GCCGTGGCAC TCGAGCAGCA GACCCGGAGC 
CGACGACGCC TCGGTGAGGT GCTCGTACGC CGAGGCATCG TCCCACGCCT CGATCTCGCC 
CGTGTGCTCG CAGAACGCGC TCGCGTGCCC TTCGTGACCC TCGTCGATCG CGAGCCACGA 
CGGGAGCTGC TCGAGGGGCT CGACCTCGAG GCGTGCGTCC GCGAGCGGCT GGTCCCGATC 
GACCGAGACG ACGATGGCAC GCTCGTGGTT GCGAGCTCGG AGGTGCCGAC CGACACCGTG 
CGCGAGAGCG CCGAACGTCT CAGCGGCGCT CCTGTCCGGC TCGTGCTCAC CACCGAGTGG 
GACCTGCTCC GCTACATCGT GCGCGCAGGC GCCGATCACA TCGGCCGACG AGCGGCCTAC 
GGTCTCGCGG AGACGGATCT CGACCTGTCG GCAGCCCACG TGCTCACGAG GGCCCAAGCC 
ATCGGCCTCG TCGTCGTCGC GGTCGTGGTC GTCCTCGTTG GCATCGTCGA CACCCGAGCA 
CTCCTCGGGG CCGCACTCGC TGGCGCTGCC ACCCTCCTCG CGCTCGTCGT GCTCTTTCGA 
GCGGTCGTTG CCTTCCGGGG CGCCGGCGTG CCGTGGGTCG TGCCAGAGCG CCTCCTCGAC 
GACGCAGACC TGCCGACCTA CACCATCCTC GTCCCGTTGT ATCGAGAGGC GGCGGTGGTC 
CCGGCGCTCA TGACCTCGCT CGCCAACCTC GACTACCCAC CAGAGAAGCT CGAGGCGCTC 
GTACTCGTCG AGGCCGACGA CGACGCCACC CGGGACGCGC TCGTCGCGGC GCGCCCGCCG 
AGCTGGGTCA CCGTCGTGAC CGTGCCGCCC GAGGGGCCCG CGACGAAGCC GAAGGCCTTG 
AACGTCGGGC TCGCGCTCGC CTCCGGTGAG CTGCTCGTGA TCTACGACGC CGAGGATCGA 
CCCGAACCCG ACCAGCTCCG GATCGTGGCC TCGATCTTCG CCGACGCCGA CCACGACCTT 
GCGTGCGTCC AGGCAGCGCT GAACTACCAC AACGCCCGCC ACAACCTGCT CACGCGCCTG 
TTCACCCTCG AGTACTCCCA GTGGTTCGAT TACCTCCTCC CCGGCCTCGA GGCGCTCGAG 
CTGCCGATCC CACTGGGAGG GACCTCGAAT CACTTCCGCA CGCAGCTGCT GCGCTCGTTG 
GGAGGCTGGG ATCCGTTCAA CGTCACCGAG GATGCCGATC TCGGCATTCG GGCCGCGGTG 
AAGGGTGCCC GGGTCGCCAC CGCCGCCTCC ACCACGTGGG AGGAGGCGAC CGCTCGCCCC 
GGCGCCTTCA TCCGCCAACG GACGCGCTGG ATCAAGGGCT ACGTCCAGAC AGCCCTCGTG 
CACGCCCGCC ACCCGATCCG GCTGGTCCGA GCGGTCGGGC CGATCCAGGC CCTCGCCTTC 
GCCGTCCTCA TCGCCGGCAC GCCGATCGCC TTCTGGACGA TCGTGCCCCT CGACCTGACC 
TTCGTGGCCT CTCTCGTCCT CTCGCCGCAC GTCCTCGTCG ATCTCGTACC GCGCTGGGCG 
CTCGCCGTCG GATTCGTCGA CCTCGTCATC GGCAACGCCG TGGTGATCTA CCTCTCCATC 
GTGGCCGTCT TCCGTCGGCG TCAATGGTCG CTCGTGTGGG CCGCCTTGCT CACGCCGGTC 
TACTGGATCT TGCACTCGCT CGCGGCCTAT CGAGCCCTCG CCCAGCTCGT GACCCGGCCG 
CACTACTGGG ACAAGACCGA CCACGGAGTC GCGCTGTGA 

 

Protein sequence

MESPRLRERA ASPPLGAALV AAGLLDEHDL AVALEQQTRS RRRLGEVLVR RGIVPRLDLA 
RVLAERARVP FVTLVDREPR RELLEGLDLE ACVRERLVPI DRDDDGTLVV ASSEVPTDTV 
RESAERLSGA PVRLVLTTEW DLLRYIVRAG ADHIGRRAAY GLAETDLDLS AAHVLTRAQA 
IGLVVVAVVV VLVGIVDTRA LLGAALAGAA TLLALVVLFR AVVAFRGAGV PWVVPERLLD 
DADLPTYTIL VPLYREAAVV PALMTSLANL DYPPEKLEAL VLVEADDDAT RDALVAARPP 
SWVTVVTVPP EGPATKPKAL NVGLALASGE LLVIYDAEDR PEPDQLRIVA SIFADADHDL 
ACVQAALNYH NARHNLLTRL FTLEYSQWFD YLLPGLEALE LPIPLGGTSN HFRTQLLRSL 
GGWDPFNVTE DADLGIRAAV KGARVATAAS TTWEEATARP GAFIRQRTRW IKGYVQTALV 
HARHPIRLVR AVGPIQALAF AVLIAGTPIA FWTIVPLDLT FVASLVLSPH VLVDLVPRWA 
LAVGFVDLVI GNAVVIYLSI VAVFRRRQWS LVWAALLTPV YWILHSLAAY RALAQLVTRP 
HYWDKTDHGV AL