Gene Afer_1918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1918 
Symbol 
ID8324014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand
Start bp2004063 
End bp2004638 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content66% 
IMG OID644953042 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003110496 
Protein GI256372672 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02947] RNA polymerase sigma-70 factor, TIGR02947 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCGGATC AGGCGCGCTT CGAAGAGCTT GCCCTGCCGT ACGCCGACAA CCTCTACTCC 
GCGGCGATGC GTATGACCCA CAACGCGGCC GACGCCGAGG ACTTGGTGCA AGAGACGTTC
CTGAAGGCTT ATCGTGCCTT CGGTACCTTC GAGGAGGGCA CCAACCTCAA GGCGTGGCTC
TATCGCATCC TCACCAACAC CTACATCAAT GCCTACCGAG CTCGTCGCCG TCGCCCGGAC
GAGACGGACC TCGACGAGGT CGAGCAGCTC TACCTCTATC GCCGCCTGGG CGGTCTCGAG
GCAGCCCTCG CGGGCCGGAG CGCCGAGGAG GAGGTCCTCG ACACCTTCAC CGATGCCGAC
GTCAAGGCGG CGCTCGAGGC CCTGCCAGAG CAGTTCCGCT TGGCCGTGAT CCTGGCGGAC
GTCGAAGGTT TTAGCTACCG TGAGATCGCC GACATCATGG ACGTCCCGCT CGGAACCGTG
ATGAGTCGGC TGCATCGGGG AAGGCGCGCG CTCCAGCGCG CGTTGATCGA GAAGCGACTG
GCTCGTGCGG AGCGGGCAGC GGAGACCGAG GCGTAG
 
Protein sequence
MADQARFEEL ALPYADNLYS AAMRMTHNAA DAEDLVQETF LKAYRAFGTF EEGTNLKAWL 
YRILTNTYIN AYRARRRRPD ETDLDEVEQL YLYRRLGGLE AALAGRSAEE EVLDTFTDAD
VKAALEALPE QFRLAVILAD VEGFSYREIA DIMDVPLGTV MSRLHRGRRA LQRALIEKRL
ARAERAAETE A