| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1897 |
|---|
| Symbol | |
|---|
| ID | 8323993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1982969 |
|---|
| End bp | 1984483 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644953021 |
|---|
| Product | permease for cytosine/purines uracil thiamine allantoin |
|---|
| Protein accession | YP_003110475 |
|---|
| Protein GI | 256372651 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.114267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCCG ACGCCTCGCG AGCGCAGCCC ATCATCGAGG CCCGCTCCAT CGACTGGGTG
CCGACTCGGG AGCGCCATGG CAAGCTGTGG CATCAGGCGC CGCTGTGGTT CCTCGGTAAC
TTCCAGTACT TCACGATCCC GATCGGCTTC ATCGGGCCAG GACTCGGATT GTCGGTCGGT
TGGACGATCC TCGCTGGCAC GTTGGGCATC GTCGTGGGGA CGTTCTTCAT GGCGTTCCAC
GGCTCCCAGG GCCCGCGCTT GGGTCTGCCG CAGATGATCC AGTCGCGAGC ACAGTTCGGC
TATCGCGGCG TGATCGTCGT GCTGTTTGCG GCACTGTTCA CCTACGTTGC CTTCAACGTG
ACCGACCAGG TGCTCTTGGC CGATGGACTC TCGAGCGCGT ACGGCTGGAA TGCCGAGGTC
GTCGCCGTGG GCTCGACGCT GATCGCCGCC ACCCTCGCCA TCTTGGGCCA TGACTGGGTC
CACCGTGCCT TTCGGGCTCT GCTCATCGCG TCGTTCCCCT TCATGGCCAT CGTGTCCGTC
GCGGTGCTGC TTGGCTCCGT GCACGGCAGC CACGTGGCGA GTTCCCACCT CGGCTTCACG
ACCGTCGGGT TCATGGCGGA GTTCTCCGCG TCCGCGGCCT ACAACATCAC CTACGCGCCC
TACGTCTCCG ACTACTCGCG CTATCTCCCG GTGTCCACGC CGACGCGTCG GGTGATCGCC
TCGGTCTTCT TCGGTGCCTC CGCGAGCGCG GTGTGGCTCA TTGCGCTGGG TGCTTGGTTG
GCCGTGCATC TCAACGCCCA AGACGGCCTC ACGGCACTCC GTGCCGCCGG CAACGGTGTC
GTCGGGGGAC TCGGATCGGT GACGGCGATC CTCTCCGCGG CGGCACTCGT GGCCACGATG
GGGATGAACG CCTACGGTGG CTCGCTCACG CTGCTCACCG CCATCGACAG CGTGCGGAGC
ATCACGCCGA GTCGGCGTTG GCGCCTTGGC GTGACGGTCG TGCTCACGGT GGTCTGGTTC
GCGATCGCAG AGTTCATCAC CCAGAACGCC GTCAACACCG TCGCGACCGC GCTGACGCTG
ATGCTCTACC TGCTCGTGCC GTGGACGGCG ACGAACCTCG TCGACTTCTT CGTCGTCCGA
CGTGGTCACT ACGCCATTCG TGATCTGTTT ACCCCAACTG GGATCTACGG TGCCTGGAGT
GCTCGGGGCT TGATCGCGTA CGCCATTGGC TTTGCGTCGG AGGTTCCGTT CATGGTGCTG
GGCCAACTCG GCCCCGTGAG CTACACCGGA CCCGTCGCGC GCGCACTCGG TGGGGTCGAC
ATTTCTTGGA TCGTGGGCCT CGTTGCGACG GCCGTCGCCT ATCTCGTGCT CGCGCGGTTG
GTGCCGATCC CCGACGAGGC CGCACGAGTT GCCGCAAGTG ACGCCTGGCT CGACACCATC
GAGGCATCCG ACGCAGGCCC TGCTGGTCTT TCGTCATCTG GGACGGCGCT CGGTGAGGTA
GCGCCCGAGG GATAG
|
|---|
| Protein sequence | MDSDASRAQP IIEARSIDWV PTRERHGKLW HQAPLWFLGN FQYFTIPIGF IGPGLGLSVG
WTILAGTLGI VVGTFFMAFH GSQGPRLGLP QMIQSRAQFG YRGVIVVLFA ALFTYVAFNV
TDQVLLADGL SSAYGWNAEV VAVGSTLIAA TLAILGHDWV HRAFRALLIA SFPFMAIVSV
AVLLGSVHGS HVASSHLGFT TVGFMAEFSA SAAYNITYAP YVSDYSRYLP VSTPTRRVIA
SVFFGASASA VWLIALGAWL AVHLNAQDGL TALRAAGNGV VGGLGSVTAI LSAAALVATM
GMNAYGGSLT LLTAIDSVRS ITPSRRWRLG VTVVLTVVWF AIAEFITQNA VNTVATALTL
MLYLLVPWTA TNLVDFFVVR RGHYAIRDLF TPTGIYGAWS ARGLIAYAIG FASEVPFMVL
GQLGPVSYTG PVARALGGVD ISWIVGLVAT AVAYLVLARL VPIPDEAARV AASDAWLDTI
EASDAGPAGL SSSGTALGEV APEG
|
|---|
| |