| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1811 |
|---|
| Symbol | |
|---|
| ID | 8323904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1893705 |
|---|
| End bp | 1895489 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644952941 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_003110398 |
|---|
| Protein GI | 256372574 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.186015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAGTT CCACCGACGT GCTCGGTGAT CTGGCACGCC GCGATCGAGA GTCGCTGCTG
GCGATCGCGC GTGAGCTCGG TGTCAAGGTT TCGTCCCGAT CGCGCAAAGC GGAGATCATC
CAGGCGATCG AGGCGTCGTC GATGGCACGC CGATCCGCGA GCGACGAGGG GGATCGCAGC
CTCTTCGCGA ACGAGGACGC AGCCGCCGCG GTGCTTCCGC CGCTGCCCGC GGACGATGCC
CAGGCTCGTG ACGCGCTGAG CGTCGTCGGG AGCGGACCGC GAGAGCGGGG TCAGTCGTCG
ACTCGGCGAC GCGAGCGTCG GCCCCAAGCC GAGAGCGCGA CCGAGGGGAC CCGAGAGCCG
ACCCTCGCGG AGGCCGATCG CCTTGCGGTC GACCTCGCGC GGCTGCTGCC TCCGATCGCC
GTGGATGCGA GTGTGCAACG GAGCGATGGC TCGCCAGGAC GCGGCGAGGC CAGTCCGGCC
GCAGCGCGGA CGGAGGCACA CGCAGAGAGC GACGGGGCTC CTGAAGCATC GGAGCAGGTG
CGCGGTGAGG TTGCTCGTCG TGGCGACGAG GGCAGTAGTC GTCGCTCGCG TCGTCGGCGC
AACAAGGATC GCGGTGACCG GCCGGCCGAG GCGGAAGGAC CGCAGGTCCA AGAGCTCATC
GAGGCCGTCG GTGTGCTCGA TCTTCGCGAC GAGGGTTATG GCTTCTTGCG AGCGAATGGC
CGTCTGACGT CATCGCGGGA CACCTACGTC CCGGCCTCGC TCGTTCGCAA GTTCGGGCTG
CGCAAGGGCG ACCAGATCGT CGGTCAGGCG CGGGCGAGCT CCCAGAACGA GAAGTTCCCG
GCGCTCGTGC GCGTCGAGCG CGTCTTCGAC ATGACGGTCG AGGATGCTCG CCGTCGCCCT
CGCTTCGAGG ATCTCACGCC GCTCTTCCCG GACGAGCGGC TGGTGCTCGA GAACGCCGAG
GATCCGCTCG AGCTCACCAC ACGCATCATG GATCTCGTTG CGCCGATCGG CAAGGGTCAG
CGCGGACTCA TCGTCTCGCC GCCGAAGGCC GGGAAGACGA CCGTGATGAA GCAGATCGCG
CACGCGATCG AGCGCAACAA CCCTGAGGTC GTCCTCTTCG TGTTGCTCGT GGACGAGCGA
CCGGAGGAAG TGACCGACAT CCGACGCTCG GTCAAGGGAG AGGTGATCGC GTCTACCTTC
GACCGGCCCG CGGAGGAGCA CACCCAGGTC GCCGAACTCG TGATCGAGCG AGCGAAGCGG
CTCGTTGAAC TCGGGCACGA TGTCGTGATC ATCCTCGATG GCATCACGCG TCTCGCTCGT
GCCTACAACC TCGCCCAGCC CGCGAGCGGG CGCATCATGT CCGGTGGCGT CGACTCGGGT
GCGCTCTATC CTCCGAAGAA GTTCTTTGGT GCCGCCCGTA ACGTCGAAGA AGGCGGCTCG
CTCACGATCC TGGCGACCGC GCTCGTGGAG ACCGGCTCGA AGATGGACGA GGTCATCTTC
GAGGAGTTCA AGGGAACCGG CAACATGGAG CTGCGCCTGG ACCGGCGCCT CGCGGAGCGC
CGCTTGTTCC CAGCGATCGA CGTGAACGCC TCGTCGACGC GACACGAGGA GCTCCTCTTC
ACTCGCGACG AGTTGGCGCA GGTCTGGAAG CTGCGCCGAG TCCTCGGTGC GATCAGCCAG
GAGGGCACAC CGGCTGCGGG TCTCGAGCTC TTGATCGACA AGATCCGCTC GACGCGCTCG
AATGCGGAGT TTCTCGCCGA GATCGCGCGT AGCCCTGGCA TCTAG
|
|---|
| Protein sequence | MVSSTDVLGD LARRDRESLL AIARELGVKV SSRSRKAEII QAIEASSMAR RSASDEGDRS
LFANEDAAAA VLPPLPADDA QARDALSVVG SGPRERGQSS TRRRERRPQA ESATEGTREP
TLAEADRLAV DLARLLPPIA VDASVQRSDG SPGRGEASPA AARTEAHAES DGAPEASEQV
RGEVARRGDE GSSRRSRRRR NKDRGDRPAE AEGPQVQELI EAVGVLDLRD EGYGFLRANG
RLTSSRDTYV PASLVRKFGL RKGDQIVGQA RASSQNEKFP ALVRVERVFD MTVEDARRRP
RFEDLTPLFP DERLVLENAE DPLELTTRIM DLVAPIGKGQ RGLIVSPPKA GKTTVMKQIA
HAIERNNPEV VLFVLLVDER PEEVTDIRRS VKGEVIASTF DRPAEEHTQV AELVIERAKR
LVELGHDVVI ILDGITRLAR AYNLAQPASG RIMSGGVDSG ALYPPKKFFG AARNVEEGGS
LTILATALVE TGSKMDEVIF EEFKGTGNME LRLDRRLAER RLFPAIDVNA SSTRHEELLF
TRDELAQVWK LRRVLGAISQ EGTPAAGLEL LIDKIRSTRS NAEFLAEIAR SPGI
|
|---|
| |