Gene Afer_1789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1789 
Symbol 
ID8323882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand+ 
Start bp1874059 
End bp1874643 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content69% 
IMG OID644952919 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003110376 
Protein GI256372552 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00598195 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGAGGA TCGAAGCACC AACCGTCCGC GAACATCACG ATCAGCGTCG TGAGCGTCTC 
CTCGACGCGG CACGGGCGTG CCTCGTCGAC CCGGCGATTC GCTCGGTCGG CTTCGAACAC 
GTCGGACCGC GCGCAGGGAT CCGACGCAAC AGCGTCTACC TCTACTTCCC CTCCGAGACC 
CACCTGTATC TTGCCCTTGC CGAGAGCGAC GTCCCCGCCC TCGCCAAGCA GTTGGCCGAG 
GCAGCGGCGG CAGCCACGCA CGACAAGCTC GCCGCCATCG TCGACGTCGT CCTGGCGAAC 
GCGCCCCGGG AGGAGTTCGA GATCTTGCGC CGCCTGGCGA GTCGCACCGC GTCCCAGCGT 
CCCGATCTCG TCGCAACTCG CCTTGGCGAG CTGCGACGTG AGCTCGCCGA ACCACTCGTC 
TCGGTGCTCG CCGACGAGGG TGTGGACTCC GCCGACCTCG TCGGATTGCT CGCCCTTGGC 
ACCCTCGAGG CGGCACTCGA CGCGATCGCT CAGGGCGAAG ATCGCGACGC GGTGCGCGAG 
GCAGTCCTCG CCACCGTGCG GAGCCCGCGC ACTCCCAGCC GCTGA
 
Protein sequence
MPRIEAPTVR EHHDQRRERL LDAARACLVD PAIRSVGFEH VGPRAGIRRN SVYLYFPSET 
HLYLALAESD VPALAKQLAE AAAAATHDKL AAIVDVVLAN APREEFEILR RLASRTASQR 
PDLVATRLGE LRRELAEPLV SVLADEGVDS ADLVGLLALG TLEAALDAIA QGEDRDAVRE 
AVLATVRSPR TPSR