Gene Afer_1764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1764 
Symbol 
ID8323857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp1850741 
End bp1851289 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content68% 
IMG OID644952894 
Productputative sigma 54 modulation protein/ribosomal protein S30EA 
Protein accessionYP_003110351 
Protein GI256372527 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1544] Ribosome-associated protein Y (PSrp-1) 
TIGRFAM ID[TIGR00741] ribosomal subunit interface protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.625638 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGTTG ACCTTCGGTG TCGAGGCTGC ACGCTGACCG AGCAGCAGCG CGCGCACGTC 
GAGGACCGTA TCGCGCGACT CGAGAAGTAC CTCGGTGCCC CTGAGCGGGT CGAGGTGCAT 
GTCGAGCGAG CCGGCAACCC AGCCAATCCG GACCGCGTCG TGACCGAGGT GACCTACGTG 
GTCTCGAAGG CGGTCGTGCG CGCACGCGGT GTGGGCGAGA CGGAGCTCGA GTCCTTCGAC 
CGTGCCGAGG AGCGGCTCAA GCGGCGCCTC GAGCGTCTGA AGGGTCGACT GGTGGCCCGC 
AGCCATCCCC ATCACCGCGG TGGCGCCGAA GCACCCGAGG CTCGACTCGA CATCAGGCGG 
CGCAAGCGTT TCGCGCTCCA GCCGCTCGAC CCGCAGTCGG CCGCGTTCCG AATGGACCTG 
CTCGACCATA GTTTCTACCT GTTCATCAAT GAGGAGACCG GGCGGCCCGC TGTCGTGTAT 
CGGCGGGAGG ATGGCACCGT CGGGCTCATC GATCAAGCCG AGGAGGAGGG TGCGGGCGTC 
GCCGACTGA
 
Protein sequence
MAVDLRCRGC TLTEQQRAHV EDRIARLEKY LGAPERVEVH VERAGNPANP DRVVTEVTYV 
VSKAVVRARG VGETELESFD RAEERLKRRL ERLKGRLVAR SHPHHRGGAE APEARLDIRR 
RKRFALQPLD PQSAAFRMDL LDHSFYLFIN EETGRPAVVY RREDGTVGLI DQAEEEGAGV 
AD