| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1707 |
|---|
| Symbol | |
|---|
| ID | 8323798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1793314 |
|---|
| End bp | 1795263 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644952838 |
|---|
| Product | Cytochrome-c oxidase |
|---|
| Protein accession | YP_003110296 |
|---|
| Protein GI | 256372472 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTTG AGATGTCGCC GAGCGCGGCG ATCGTCGATC AGCGTGACCT CGAGGCTCGA
GGGTTGAAGT TCGCACGTGC GTGGTTCACG GGCAACTTCT TCACTGGCCT CGTTGGAGGC
GCGATCTTCT ACGCGTTCGG CCATTGGCTC GGCAACTTCA TTGCCTCGGG CTATACGGTG
GTAGTGAACT CCGGCCAGAA CGAGATCGCC GTGTACTTGG CACTCATCTT CGGTGCCGTA
GGCTTTCTCG CTGGACTCGG GGTCTTCAAC TACCCGATCC AGAAGCTTCT CGGATGGGAA
CCGAAGGACC CGCCGAAGTC GGAGAAGCGG ACGTTCTGGG AGCACTTCAC GTACTCGACC
GACCACAAGG TCGTGGGCGT GCAGTACCTG TTCGTCACGC TGCTGTTCTT CCTGACCGGT
GGTTTGCTGG CGCTTGCGAT CCGCACGGAG CTCTTGTCGC CGACGTACCA CATCTGGGCG
GCCGATACCT ACATCGAGGT GGTCGGTGAG CACGGAACGA TCATGATGGC GATGGCGACG
TCGCTCGTGC TCGGTCCGTT CGGTAACTAC CTGGTGCCGC TCATGATCGG GTCGAAGAAG
ATGGCCTTCC CCCGCCTCGA GGCGGTGTCG CTGTGGCTCC TCGTCGCGGC GTACATGGTC
ATCATCTCGG CGCTGTGGCA GGGTGGATTC CAGGCCGGTT GGACTGGCTA CGCACCGCTC
TCGATCCAGG GTGGACCCGG ACAGTCCGAT TACGACGTCG GTTTCGCTCT GGTCGGCATC
GGTATGATCA TCGGTTCGCT CAACATGGTG GCGACGATCA TCAACTACCG CGCGCCGGGG
ATGAAGTGGT CTCGGATGCC GATCCTGGTG TGGGGTTTGC TGACGACGGC CTTCACGATG
TTGCTCTCGG TTCCGGTGTT CGCAGATGGC CTCTTCATCA TGGGTCTCGA TCGTGCCGTG
CGCACGTCGA TGCTCTATGC GGGCCACGGC GGCTCGAGCT TCCTCTGGGA GAATCTGTTC
TGGTTCTTCG GTCATCCCGA GGTCTACCTC ATGGCGATGC CTGGCTTCGC GATGACCATG
GAGCTCTTGC CGGTCTTCGC ACGCAAGCCG GTCTTTGCCT ACAAGACCTC GGCGGCGGGC
ATGATCGGTA TCGCTGCGCT GAGCTTCTTC GTGTGGCAGC ATCACCTGTT CATGTCGGGC
ATGAACCCGG ACATGCGTCC GCTGTTCATG CTGACCACGG AGCTGATCTC GATCCCGACC
GGCTTCTTGT ACCTGGTCAG CATGGGCACG CTCTGGCGCG CAAAGATCCG CTTCGAGGTC
CCGATGCTCT TCGTTCTCGC CGTGTTCTGG AACTTCCTCT GGGGCGGCGT GACGGGAGTG
TTCAACTCGG ACGTGCCGGT GGACACGTTG GTGCACGGAA GCTTCTTCGT GCTGGCGCAC
TTCCACTTCA CGATCATGGG TCAGCTCGTG TTCATCGTGC TCGGCGCGAT CTACTACTAC
ACACCGTTGC TGTTCGGTGT GCGGTTGAAC GACAAGCTCG GGAAGTGGTC CTTCTGGCTC
ATCCTGCTCG GCTTCAATGG GACCTTCTTG CCGCTCTTCA TGGTCGGTCT GCTGGGTCAG
CCGCGCCGCG TGTTCGAGTA CGCCCTTCGG CTCCAGCACC TGAACCAGTT CGCGTCGATC
TCCTCGTACG TGCTCGGCTT CGGAATCCTG CTCTACGTGT TCAATCTGAT CTGGTCGCTC
GCCGTCTGGC GGACGCCGGC TGGTCCGAAC CCGTGGCGCT CGGAGGGTCT TGAGTGGCAG
GTTGGCTATC CGGTACCGGC CGACAACTTC GAGGAGATTC CGGTCGTGCT TCGCAGCCCG
TACCAGTACG GCGTGAAGGA TCGGGGTCCG GTTGCCGAGC TCCATCCGTC GGCTGAGCAG
GCCGCTGTCG TCGCTGGAGG TGAGGAGTAG
|
|---|
| Protein sequence | MAVEMSPSAA IVDQRDLEAR GLKFARAWFT GNFFTGLVGG AIFYAFGHWL GNFIASGYTV
VVNSGQNEIA VYLALIFGAV GFLAGLGVFN YPIQKLLGWE PKDPPKSEKR TFWEHFTYST
DHKVVGVQYL FVTLLFFLTG GLLALAIRTE LLSPTYHIWA ADTYIEVVGE HGTIMMAMAT
SLVLGPFGNY LVPLMIGSKK MAFPRLEAVS LWLLVAAYMV IISALWQGGF QAGWTGYAPL
SIQGGPGQSD YDVGFALVGI GMIIGSLNMV ATIINYRAPG MKWSRMPILV WGLLTTAFTM
LLSVPVFADG LFIMGLDRAV RTSMLYAGHG GSSFLWENLF WFFGHPEVYL MAMPGFAMTM
ELLPVFARKP VFAYKTSAAG MIGIAALSFF VWQHHLFMSG MNPDMRPLFM LTTELISIPT
GFLYLVSMGT LWRAKIRFEV PMLFVLAVFW NFLWGGVTGV FNSDVPVDTL VHGSFFVLAH
FHFTIMGQLV FIVLGAIYYY TPLLFGVRLN DKLGKWSFWL ILLGFNGTFL PLFMVGLLGQ
PRRVFEYALR LQHLNQFASI SSYVLGFGIL LYVFNLIWSL AVWRTPAGPN PWRSEGLEWQ
VGYPVPADNF EEIPVVLRSP YQYGVKDRGP VAELHPSAEQ AAVVAGGEE
|
|---|
| |