| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1688 |
|---|
| Symbol | |
|---|
| ID | 8323779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1773518 |
|---|
| End bp | 1774012 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644952819 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_003110277 |
|---|
| Protein GI | 256372453 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCGATCC TGCCGATCCG AACCATAGGC GATCCGGTGC TCTCGCATCG AGCTCGCGAG
GTCGAGACGA TCGACGCTCG CCTCGATCAG CTCATCGAGG ACATGATCGT GACCATGCAC
GAGGCTCCCG GAGTCGGGCT TGCGGCCCCG CAGGTGGGTG TCGATCTGCG CCTGTTCGTC
TGGGACATCG GTGACGGTCC GGACGTTGCG ATCAACCCCG AGATCGTCGA GCGTACGGGG
ACGTGGCGCT ACGAGGAGGG TTGCCTCTCC GTTCCTGGCT ACTTCTGGCC GATCGAGCGC
CCTCGCACGG TGCTCCTGCG CTACGTCACC CGTGACGGCG AGGTCGCCGA GTTGGAGGGG
AGCGACCTCC TCGGGCGCGT GTTCCAGCAC GAGACAGATC ATCTCGATGG TGTGCTGCTC
ATCGAGCGAC TCGACGAGGA GGAGCGGCGC GAGGCCAAGC AACGCATCGC GCGTGAGCGC
TGGCTCGGCA ACTGA
|
|---|
| Protein sequence | MPILPIRTIG DPVLSHRARE VETIDARLDQ LIEDMIVTMH EAPGVGLAAP QVGVDLRLFV
WDIGDGPDVA INPEIVERTG TWRYEEGCLS VPGYFWPIER PRTVLLRYVT RDGEVAELEG
SDLLGRVFQH ETDHLDGVLL IERLDEEERR EAKQRIARER WLGN
|
|---|
| |