| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1625 |
|---|
| Symbol | |
|---|
| ID | 8323716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1712709 |
|---|
| End bp | 1714349 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644952757 |
|---|
| Product | 2-oxoglutarate decarboxylase |
|---|
| Protein accession | YP_003110215 |
|---|
| Protein GI | 256372391 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTCGTCG AGGCCCTTAC CCTCGGTGGG CTCGCGGGCG CGGTGCTCTG CCCAGGGAGT
CGGTCGACGC CGATCGCGGC AGCGCTGAGT GCGAGCGATG CGTCGGTCGT CGTCGGCCTC
GACGAGCGCG AAGCTGCCTT CTTCGCGCTC GGGTGGGCGA AGGCACTCCG TCGACCGGTG
GCGGTCGTCA CGACGAGCGG GACCGCTGCG CTGGAGCTCG TTCCCGCGCT CGCCGAGGCT
CGCGAGGCGG GCGTCGCGCT CGTGGCGATC GTGGCGGACC GGCCCCGCTG GGCCCATGGC
GTGGGCGCTG CACAAACGGT CGAGCAGGCC CAGACGCTCG CGTCGGTGGC CAGCGTCATC
GATCTGGAGC TCTCCGACGT CGTGGACGCC GAGCAGCTCG CTGGCGTCGC GCACGAGCTC
CTCGTGCGCA CGGTTGCCGC GCCGTTCGGC CCTGGGCCGT GCGTGCTGAA TCTTGCGATC
GCCGAACCGC TTCTCGTCGA CGAGGAGGTT CGGATCGGAC CTTGGCATCC GCGCTCGGTG
ACGATCCCGA GTCGTCCCAG CCTGGCGGAT GCATGGCTCG CGCAGTGGTT CGATCCTCAG
CGTCGAGGCT GGCTCGTCGT CGGTGAGGAC GACACGATCG ATGTCGATGC CCTCGCCAGC
GTCGCCGCGC ACCTGGGCTG GCCCGTGCTG GCCGATCCGC TCGCTGGCGT CGAGCGCGGC
CCGTGGGTCC TCGAGCACCC CGAGCTCGTC CTGCGCTCAC TCCCCGACGC CTCCCCAGAG
GTTGTCCTCG TCCTCGGCGC CCCACACGCC TCGCGTGTGG TCGCCGAGCG CATCGCCGTT
GCGGCACGAC GGGGCATCCC TGTGGCGTGG ATCCAGAGCC GATCGCGCTG GCGCGATCCA
GCGCGCCTCG CCACGACGGC GGTGGTCGCC GACGTCGGCG ACGCCCTGCG GCGTGCGCTG
CTGACCGTGC CGGGCGGCCA CGCGGGCGAG CCGTGTGGGT TGTGTGAGCG CGATCGCACC
ATCGCGGCGA CGCTCGAGCA GGTGGTCGCG GATGGGCCCA CTGGCGAAGT CGCCCTCGCC
CGGGTCGTCC TCCAGGGACT GCACGACGGA GAGTCGCTCG TCGTCGCGTC GTCGCTGCCC
ATTCGCCACC TCGAGGTCTT CGGCGGTCGC GCCCCTGCTG GCGTCCGGGT CCTCGCGAAC
CGAGGTCTGA ACGGCATCGA CGGCACCCTC GCCACCTGGC TCGGCGTCGC CCACGCGTCG
AGAGCGCTCA GTGTCCTCGT CGTCGGGGAC CTCACCGCGC TCTACGGACT CTCGGCCTTG
TGGCAACTGC CGTTGCCCGA GCGAGGGCTG GTCGTGGTGC TCGAGAACCA AGGAGGCGTC
ATCTTCGACC GCGTCGCTCC GGCGCGCTTG CTCGACCCCA CGACGCAGCG CTCCTTCTTC
GTGACGCCGC CACGGTACTC GCCAGGACGC ATCCTCGAAG GCCTCGGCCA TGAGGTGATG
ACGCTCAAGG ATGCGGCCTC TGTCAAGACG GCCCTCTCGC GCGCCCGAGC GGGCGCGTTC
GTCGTGGCCC GCGTGGGCAC GACTCGCGAG GCGACCAACG CCGAGCTCGA TAGGCTCTAC
CAGGCTGCCG GACGGTCGTG A
|
|---|
| Protein sequence | MLVEALTLGG LAGAVLCPGS RSTPIAAALS ASDASVVVGL DEREAAFFAL GWAKALRRPV
AVVTTSGTAA LELVPALAEA REAGVALVAI VADRPRWAHG VGAAQTVEQA QTLASVASVI
DLELSDVVDA EQLAGVAHEL LVRTVAAPFG PGPCVLNLAI AEPLLVDEEV RIGPWHPRSV
TIPSRPSLAD AWLAQWFDPQ RRGWLVVGED DTIDVDALAS VAAHLGWPVL ADPLAGVERG
PWVLEHPELV LRSLPDASPE VVLVLGAPHA SRVVAERIAV AARRGIPVAW IQSRSRWRDP
ARLATTAVVA DVGDALRRAL LTVPGGHAGE PCGLCERDRT IAATLEQVVA DGPTGEVALA
RVVLQGLHDG ESLVVASSLP IRHLEVFGGR APAGVRVLAN RGLNGIDGTL ATWLGVAHAS
RALSVLVVGD LTALYGLSAL WQLPLPERGL VVVLENQGGV IFDRVAPARL LDPTTQRSFF
VTPPRYSPGR ILEGLGHEVM TLKDAASVKT ALSRARAGAF VVARVGTTRE ATNAELDRLY
QAAGRS
|
|---|
| |