Gene Afer_1581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1581 
Symbol 
ID8323672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand+ 
Start bp1666076 
End bp1666636 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content66% 
IMG OID644952718 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003110176 
Protein GI256372352 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGGTT GGACGGACGC GAGCGACGCA TCGCTCGCCG TTGGCATCGG TCGATGGCAC 
GAAGCAGCGC TGCAGGAGGC GTACCGACGC TACGCGTCGA CGGTCTGGGG CATCGCTCGA 
CGCGTCACGC GCGACGCGAT GATCGCCGAG GAGATCACTC AAGAGGTCTT CCTGACCCTG 
TGGCGCGAAC CGGAACGCTT CGATCCGGCA CGAGGATCCC TGCGCACCTG GCTCGCAACC 
CTTGCACACC GACGGGCCGT CGACGCCGTC CGCCACGACG CAGCCCTCAG GCGACGCGAG 
GACCGCGACC ATCAACTCAC GAGGCCGCCG ACGACCGCCG AGATCGAGGT GGTGATGGAT 
CGCGTCATCG TTGCCGACGC ACTGGCCTCT CTCTCCGAGC AAGAACGTCG CGCCATCGAA 
CTCGCCTACT TCGACGGCCT CACCTACCGC GAGGTCGCAG CGCGCCTCGA AGAACCCGAA 
GGAACGGTGA AGTCCAGAAT TCGAGGAGCG CTGACGAAGC TGCATCGGCA GATGGTCTCG 
ACGAGAACTC CGGAGGCATG A
 
Protein sequence
MEGWTDASDA SLAVGIGRWH EAALQEAYRR YASTVWGIAR RVTRDAMIAE EITQEVFLTL 
WREPERFDPA RGSLRTWLAT LAHRRAVDAV RHDAALRRRE DRDHQLTRPP TTAEIEVVMD 
RVIVADALAS LSEQERRAIE LAYFDGLTYR EVAARLEEPE GTVKSRIRGA LTKLHRQMVS 
TRTPEA