| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1538 |
|---|
| Symbol | |
|---|
| ID | 8323624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 1610918 |
|---|
| End bp | 1612510 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644952671 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_003110134 |
|---|
| Protein GI | 256372310 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG GGTTCCCCGC AGAGGTCGAG ATCTACGACA CGACCCTGCG CGACGGTTCC
CAGCAGGAGG GGATCTCGCT CTCGGTCGAC GACAAGCTGA AGGTTGCGCG CCAGCTCGAC
GCCCTCGGTG TTCACTACAT CGAGGGAGGG TGGCCCGGCG CGAACCCGAA GGACGCAGCG
TTCTTCGCCA GGGCTCGCGA CGAACTCGCG CTCCACACCG CACAGCTCGT CGCCTTCGGA
TCCACCCGAC GAGCCTCGAC GACCGCGGAG AGCGACCCCA ACCTGGCTGC ACTCACCAAT
GCCGGCGTCG GCCTGGCCTG CATCGTGGCC AAGGCGTGGG ACGTTCACGT CATCCATGCG
CTCCGCACCT CCCTGCCAGA AGCGGTCGCC ATGGTTGCGG ACTCGGTTCG CTGGCTCGTC
GACCACGGGA TCCGCGTCAT GCTGGACGCA GAGCACTTCT TCGACGGTTG GCGTCACGAC
CGGTCCTTTG CCCTCGACGT CCTCGCCGCA GCCGCCGACG CCGGAGCCGA ACGCTTGGTC
TTGTGCGACA CCAACGGCGG CACGCTGCCT GATGACGTCG GACCCATCGT CGACGACGTA
CGAGCTGCCG TCGCAACACC GCTCGGGGTC CACTTCCACA ACGACTCGGG GTGCGCGGTC
GCCAACTCGC TCCTCGCGGT GGCCCACGGC GTGATCCAGG TGCAAGGGTG CATGAACGGC
TATGGCGAGC GCACGGGCAA CGCGAACCTC GTACCCGTGA TCGCGGGGCT CAGCCTCAAG
CGATCGGTAC GCACGATTCC GCCGGAGAAC CTCGAGCTGC TCACGACCGT ATCGCGCCAC
ATCGCCGAGC TCACCAATCA ACCCCTGCCG CCACAGAGCC CCTACGTTGG GGCCTCGGCC
TTCACGCACA AGGCGGGCCT CCACGTCAGC GCGATCGCAC GTCGTCGCGA CGCCTACGAG
CACATCGATC CCACACTCGT CGGCAACACC ACGAGGTTCG TCGTCTCCGA GATGGCCGGA
CGCCAGAGCA TTCAGCTCAA AGCCACGCAA CTCGGGATCG ACCTCGGCGA GGACGACATC
GCCGAGGTGC TCCGCCGTCT CAAGGATCTC GAGCATCGTG GCTACCACTT CGAAGCCGCC
GACGGCTCGC TCGAGCTCCT GCTGCGACGC GCGAGCGGCT GGACGCTCGA CGACGTCGCC
GTCGAGTCCT ATCGCACGAT CTCCGACTGC ATGACCGACG GACCCCGGGC CACCGAAGCC
ACCGTCAAGC TCACGGTGAA CGATCGGCGT GTCATCGCGA CCGCCGAGGG CAACGGTCCG
GTGAACGCCC TCGATGAAGC CTTACGCGCA GCCCTCGACC CCGCCTTCCC CCTCCTCAAG
ACGGTCAAGC TGACGGACTT CAAAGTACGT GTCCTCGACT CAGACCAGGG CACGGACGCC
ACCGTCCGTG TCCTCATCGA CTTCCAAGAC CCAGAAGACA CCTGGACGAC GACCGGCGTC
TCGACCAACG TCATCGACGC TTCGTTCGAA GCCCTCCTCG ACGGCCTCAT CGTGGCGATC
GCTCGCGCCC GCGACCGAGG CGAGGAATGG TAG
|
|---|
| Protein sequence | MSAGFPAEVE IYDTTLRDGS QQEGISLSVD DKLKVARQLD ALGVHYIEGG WPGANPKDAA
FFARARDELA LHTAQLVAFG STRRASTTAE SDPNLAALTN AGVGLACIVA KAWDVHVIHA
LRTSLPEAVA MVADSVRWLV DHGIRVMLDA EHFFDGWRHD RSFALDVLAA AADAGAERLV
LCDTNGGTLP DDVGPIVDDV RAAVATPLGV HFHNDSGCAV ANSLLAVAHG VIQVQGCMNG
YGERTGNANL VPVIAGLSLK RSVRTIPPEN LELLTTVSRH IAELTNQPLP PQSPYVGASA
FTHKAGLHVS AIARRRDAYE HIDPTLVGNT TRFVVSEMAG RQSIQLKATQ LGIDLGEDDI
AEVLRRLKDL EHRGYHFEAA DGSLELLLRR ASGWTLDDVA VESYRTISDC MTDGPRATEA
TVKLTVNDRR VIATAEGNGP VNALDEALRA ALDPAFPLLK TVKLTDFKVR VLDSDQGTDA
TVRVLIDFQD PEDTWTTTGV STNVIDASFE ALLDGLIVAI ARARDRGEEW
|
|---|
| |