| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1525 |
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| Symbol | |
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| ID | 8323610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 1592754 |
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| End bp | 1596257 |
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| Gene Length | 3504 bp |
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| Protein Length | 1167 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644952657 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003110121 |
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| Protein GI | 256372297 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGCAGG CACGGATCGC AGCGGTGCTC GCTGCCGTGC GCGCTACGGT TCGTGCCGAG
CTCGATCGGC TCGTCCATTC GGCGCTCGAG CTCGACGACG AGAACGTCGT CGACGTCGCC
GGGTTGACCG ACGCAGTCCT CGATGAGATC GCCTCGACCC TCGAGCGAGG GCACGTCGAT
GACGAGCGTG TTGCGCAGAT CGCGCGCATG CATCACCGTA TCGGTGTCGA GTTCGATCGG
GCGGCCCAGA TCTACGCACT GCTGGAGCAG GTACTCGTCG AGCAGGGACT CGGCACCGAG
GCGCTCCTCG TCGTCGCGCA CGAGCGCGCA CTCTCTCGCT CGATGCGCAT GCTCGCCGAA
GAGCGACTCG AGGCGCGCGA TGCGCTCGAG CGCGCGATCG TGGAGCTCGC GAACAGTTTC
GACGAGTTCG TGGGCCTCCC CGAGCAAGAC GCCATCGAGC GCATCTGTGA TCTGGTGGTT
CGTGTCACCG GTCTCCCGCT CGTGTACTGG GCCGAAGCAG AGGGGACCCC TCACAGTGGT
CTCGGACCCG GCGTGGTGGT ACGGGCGGCA GCGGGGGTCG CGACGCCCTA TGCCCTAGGC
CTGACGCTCT CGACCGATGA GCAACTGCCT GCTGGTCAGG GGCCGGTTGG GCGTGCACTG
CGGACCGGGC GCGTCACCGT GTCCGGATTG CCGCACGACG CGCGCTTTGC ACTTTGGCGC
GGGATGGCTG ACGCGTGGGG ACTCGGCTCC GCAGTCGTGG CCCCGGTGTC GATCTCACTG
CACCGATCGG GTGTCATTGC GCTCTATCGT CCACGGGGAG CGGAGCTTCC CGACGACGTC
GAGGACATCG CCGCGGCACT CGGTCACGAG CTCTCACGGC TGTTTCGCGC CCGTGCGATG
GCGCGACTCG AGCGTCGGCG CCAGGCGCTC GACCAGGTGC GAGCGACGAT CCTCCAGAGT
GCGGAGTCCT CGTCGCGTGA GTTCTTTGCC AAGGTGACGG CGTCGCTGGT CGGCTGCGGT
GCGGTCGACC GGGCTGCGTT CTACGAGCAC GCGGGTCGCC AGGACGGCCT CGAGGTCCTT
CGACTCGTCC ACGTCGAGGC GGAAGACGAC GTTCGTCGCG AGCTCGAGGT CGTCGAGGTC
GTGGTCGACC CCGCGCGCGC AGCGGAGGCG CCGCTGATCG CTGCTGCGGT GCATCGCGAA
CGCGTTCTCA CCGCTGGCGT CGCCGCCAGC TGGGCTGGAT ATCGTCTCGA TCGCACCGCT
GGGCGCCTCG CCCATGGGCA GGTGGTGGTC CGCTATCCCG TCGTCAGCCA AGGCGAGCTC
ATGGGCGTGG TGATGGTGAG CGTCGCCGAC GAGCAGCATG GACCGCTCAC CGATGCGCTC
TTCGACCAGC TCGGTGACGT GATTGGCGCT GCGGGAGCTC GCCTCGAGCG CAATCAGGGA
TTGCGTACCA CTGAGGCGGT CGCGCAGGTA TCGCGATCAC TCCTCGATGC CAGTGCTGCT
GTGGTGGCTG CGGGCGCACC CGAGGACGTC CAGGAGGCCG TGCTGCGGGC GCTCGCGAAC
TCTGGGGTGG TGGCGGGGGC ATGGCTCTCT CGCTGGGATG CTCGCGCAGG TGCGAGCGAG
ATCGTGCGAG CGCTGCGCGT GCCGCCGGGT GCTGCGACCG CACTCACCCG CGCCGTGGGG
CCATCGCAGG GAATCGTGGT CGACACGTTG GGTCGAGTCC GTGATCTTGC CCACGGGCAG
CTCGTCGCCG TCGAGCAGGG TGCTGGCGCG GCAGTCACCG AATGCGGGTG GCGCCACGCG
GTACTCGTTC AGGTTCCGAC GAGTGGCTCG GCCGATGGGC CCCACGACAC GCTCGGAGTC
GGCCTGGCTC ACGCTGGCGT CGACGAGCTG CGGCTGGCCT CGGTCATCGG CACCGGTGCC
CAACTCCTCG GCCTCGGTAT GGCGGAGGTC GCGCTTCGTG ATCGACTCGA CCGAGAGCGC
GCGCTGCAGC AGCGACTTGC TCAGACTGAC ACGCTCACGG GGCTCATGAA TCGCTCCGCC
TTCGAGGTTC GATTGAACGC ACTCGTCGCG CAGGAGCCGG TAGCGGTCGG ATTCTTGGAT
CTCGACGGCT TCAAGGACGT CAATGACTCG CTCGGCCATA CGAAGGGTGA CGAACTCCTC
GCTGCGCTCG GGCGCGCGCT GGCTCGGCTC GCCGCCCCCG ACGTGTTCGT AGCACGCCTC
GGTGGCGACG AGTTCGCGGT CGCACTGGTT GGATCGGCAC GTCACCGCCT AGATCAGATC
GCAGAGCGTA TCAGCGTGAT GGTACGCACG ATCGGGCAGC GGTGGCGCAT CACCGGGTCG
ATCGGGTGGG CACTGGCGCC CGACGACGTG CGCACGACTC GCGAGCTTCT GATGGCCGCC
GACGAGGCGC TCTACGCGGC CAAGGCGGCG GGGAAGGCCC GGTGGGTTCG CTACGGCGGC
GACGTTTCGC AGCGGGTCCA GCGGCGTCGG CGGGTGCGTG ATGGGCTGGT CGATGCGCTG
GCGTCAGGCG CAGCCACCTT CGCGTGCCAG CCGAAGGTCG ATGCACGTCT CGGCACCGTG
GTCGGTGTCG AGTTGCTCCT GCGCTGGCCC GAGATCGCGA CCGTCGATGT CGTCGCGGAG
CTTCGCGCCG CGCCGGAGCT TGCACGCTCG CTCGGGCGTG CTGCACTCAG GACCGGCGCG
GACTATTCCG AGAGGCTCAA CGGGGTTCCC GTTGCCGTCA ACATCACGCC ATCACACTTT
CTGCACGGTG AGTTCCTCGA CGATCTGGAC GAGCTCGTGC CTCGCGGCTC CCTACTGGTC
GTGGAGATTA CCGAGGACGT CGCTCTCGAA GACCTCGAGC TTGCGGCGGC GCAAGTGGCG
GCGGTGCGCG CTCGTCGCAT CGCAGTGTCC CTCGATGACT TCGGTACTGC GGCTTCGTCG
CTGTCGGCAC TGGCGCGCTT GCAGGTGGAC GAGGTGAAGG TCGACCGCAG CTTCGTGCAA
CGGGCGCGTG AGGACCACCA TGCCTTTTCG GTGCTTGCTG CGCTCGCGAC GCTCGAGGAG
ACGGGCAGCG TGTCCGTGGT TGCCGAGGGC GTCGAGGTCG ACGAGGAGAT CGGTCTGTGG
CTCCGTCTCG GTGGTAGTTG TGTGCAGGGT TATCGCTATG CGCGCCCGGG TTCGCTCGCC
TCGGTGCAGG CCCTCATCCA GTCCACTCGG TTCACACCGA TCGACATTCC GCGCTGGCGT
GTCGACGACC TGATCGTGCT CTCGACCCTT GCGGCGGCTG AACGGCATCG GGGCATTGCG
CCACGCGAGA AGCTGGCGCT CGAGCACTGG TTCGACGGAC CGGGGCGAGC ATATGCTGAC
GCGCCAGGGT GGGAGCGAGC GCGTCGAGCT CTCTGGCGTG GTCGCGGGCT TACTGCAGAG
CTGGTATATG CGTTCGCGGA CCTTCGGACG GTGATCGACC ATGCGCGACG GGCTGCGGCG
TACGGCCCCC CCAGCGCTCT GTAG
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| Protein sequence | MGQARIAAVL AAVRATVRAE LDRLVHSALE LDDENVVDVA GLTDAVLDEI ASTLERGHVD
DERVAQIARM HHRIGVEFDR AAQIYALLEQ VLVEQGLGTE ALLVVAHERA LSRSMRMLAE
ERLEARDALE RAIVELANSF DEFVGLPEQD AIERICDLVV RVTGLPLVYW AEAEGTPHSG
LGPGVVVRAA AGVATPYALG LTLSTDEQLP AGQGPVGRAL RTGRVTVSGL PHDARFALWR
GMADAWGLGS AVVAPVSISL HRSGVIALYR PRGAELPDDV EDIAAALGHE LSRLFRARAM
ARLERRRQAL DQVRATILQS AESSSREFFA KVTASLVGCG AVDRAAFYEH AGRQDGLEVL
RLVHVEAEDD VRRELEVVEV VVDPARAAEA PLIAAAVHRE RVLTAGVAAS WAGYRLDRTA
GRLAHGQVVV RYPVVSQGEL MGVVMVSVAD EQHGPLTDAL FDQLGDVIGA AGARLERNQG
LRTTEAVAQV SRSLLDASAA VVAAGAPEDV QEAVLRALAN SGVVAGAWLS RWDARAGASE
IVRALRVPPG AATALTRAVG PSQGIVVDTL GRVRDLAHGQ LVAVEQGAGA AVTECGWRHA
VLVQVPTSGS ADGPHDTLGV GLAHAGVDEL RLASVIGTGA QLLGLGMAEV ALRDRLDRER
ALQQRLAQTD TLTGLMNRSA FEVRLNALVA QEPVAVGFLD LDGFKDVNDS LGHTKGDELL
AALGRALARL AAPDVFVARL GGDEFAVALV GSARHRLDQI AERISVMVRT IGQRWRITGS
IGWALAPDDV RTTRELLMAA DEALYAAKAA GKARWVRYGG DVSQRVQRRR RVRDGLVDAL
ASGAATFACQ PKVDARLGTV VGVELLLRWP EIATVDVVAE LRAAPELARS LGRAALRTGA
DYSERLNGVP VAVNITPSHF LHGEFLDDLD ELVPRGSLLV VEITEDVALE DLELAAAQVA
AVRARRIAVS LDDFGTAASS LSALARLQVD EVKVDRSFVQ RAREDHHAFS VLAALATLEE
TGSVSVVAEG VEVDEEIGLW LRLGGSCVQG YRYARPGSLA SVQALIQSTR FTPIDIPRWR
VDDLIVLSTL AAAERHRGIA PREKLALEHW FDGPGRAYAD APGWERARRA LWRGRGLTAE
LVYAFADLRT VIDHARRAAA YGPPSAL
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