| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1469 |
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| Symbol | |
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| ID | 8323552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 1537652 |
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| End bp | 1540072 |
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| Gene Length | 2421 bp |
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| Protein Length | 806 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644952600 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003110065 |
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| Protein GI | 256372241 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0948188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTCGGC CCGAGCTGCC GGCACCACCA TCTCCAGGCG AGCGCCAAGG TGAGCTCTAC
GGTGCCATCT CGCGCGTGCT CGCCGCGCCG TCATCACCGC ACGGCGTGCT CGACCAGCTC
CTCGGAGTCC TGTCCGCAGC GCTCGGTGTG CCGTGCGCGG TGCTCGGCGT GCATCAAGGA
TTCTCGCGCC TGCGCGTGGT CCGTGGTCCC ACGGCGATGG GTGGCCTCGT CGGTCTGGAG
TGGGCGGCGC TCGCAGCGGT TGCTGATGGC ACGGTTGTCG AGGTCGGGGT TGACGCTGCG
TCCTTCTGGG TCCTCGCGCT CGGAGAGCGA CTGTTCCTTG CGGGCGCTGC GGAGGGCGTC
GATCCGGCTG GGTTGGCCCT CGTCGAGCGG CTTGCACCGG CCGTTCGGAT CGCTGCGGCA
AGCTTCATGG CAGATCATGA GCGGCGGCGG GCCGATCGGC TCCGCCGGGC GCTCCGGATA
GGGGAACGAG TCTCGGATCA GTCTCGGGAG GATCGCCTCC GCCTCCTTGG TCGCGCTGGC
GCGTCGGTGC TCGGCGCATC GCAGGTGGTC GTGAGTGAAG TCGCCGGGCG GAGCCTCGTC
GTGCGAGCCG CGGCGGGGAC GGGTGACTTC GGCTTGCTGG AGGAGCTGGA CGTGGGCGCC
GGGGTCGCCG GATGGGTGCT TCGGAATCAG CTGAGCGTCC TCGTCGGCTC TGCCGAGGCT
GGCGTGGGCG TCCCCAGCGA GGCCGTGCGG GCCATTCGGG GCGTCGTCTC GGCCGAGAGT
GCGCTCGTCG TGCCGCTCGT CGGTGCCGAT GGGCCTGTGG GCGTGCTCGC CGCCCTGGAT
GCGGTGCCGT ATCGCTTCGA CGTCGGCGAC GTGTTGGCGC TCGAGCGCCT CGCCCGACTC
GTCGCGCTCT GGGACGTCCG CGATCGTGGA CGTCTTCTTG GCGCACACCT CGGTGCCGAG
GAGCATCTGC CTCTCGCCAA CAGCCTTGGC ATGTCGATCG TGCTGGAGAC GGAGCAACGG
CGCATCGAGA TCGCGACCGC TGCCGCGAGG GATCCGGAGT GGGTGATCGA TCTCGGCCTG
GATCGGTGTC TTGTCGTGGC TGGGAGTGCA GCGGTCCGTC GAGCGGCCAC CGACGCACTC
CGAGAGAGCG CCGACCGCGA TCCCCTCACC GGTGTCTGGC ATCGGCAGGC CTTCCTGGCC
AGGGCGAGCG AGCGACTGGA AGCCGAAGGG CCCCGTTCGG GCGCGTACGT GCTGCTGATC
GATCTCGACC AGCTGTGGGA CGTCAACGAA CGGGAGGGAA TCGCAGCGGG TGATCGCTAC
CTGGTACGGG CCGTCACTGG GGTCCTCGAG GCTCTCGGTC CGGAGGCGGT CGTCGGGCGT
ATCGGTGGCG ATGAGTTTGC GGCTCTCATC GTCGGCACGA CGAGTTCGCG TGATTTCGGC
ACGATCCGCC GTGACATGCT CGAGGTACTC GGGGCAAGGG GGGTCGCGGT GTCGCTCGGC
GCGGCCAGTA TTCAGGACGG GGACGTGCTC GCAGCCGTGC AACGCGCCGA GCGCGACCTC
GTGGCCGATC TCGAGCGTCG GGGGGTGGCT CGTGTCGAGC GCGTCACCGC GCCGCTCGAG
CCGGCCGACA TCGCGCTCGC GCCCGAACTG GTACGCGCGC TCGAGGGTGA TCGCGAGGCG
GGCACCTTCG GCGTCGTGTT CCAACCGGTC GTCGAGCTTG CGACCGGCCA GATCGCCGGC
GTCGAGGCGT TGGCTCGGTG GGAGCATCCG AGGCTCGGTA CGGTGCTCCC GGGCCGTTTC
CTCCCGATCG CCGTCCATCT TCGCCTCGTC GAGCGCGTCG ACGAACTGGT GCGCGCGCTC
GCGCTCCGTC AGGTCGTCGA GCTCGAGCGC ACCGGGGTGG CACGAGGGCT TCGGGTCTCG
TTCAACCTGT CGGCCGAGAG TGCGCGCCGG CGCGGCATCG CGTCACGCCT GATCGAACTC
GTCGAACGAT CGGGCATCGC CGCGAACCAG GTCGTCGTGG AGCTCACGGA GTCCGAGATC
GCTGCCTCGG CCCTCGAGCA GCTACGACGC ACCCTCGAGG CACTCGCGGG AGCAGGCATC
AAGGTGGCCC TCGACGACTT CGGCGTCGGC ACCTCGTCGT TTCGCCACCT CGCGACGCTC
GCCGTGCACG AGGTCAAGAT CGATCGAAGC TTCGTGGCCA ACGTGGGTAC GAAGAACGGC
TCGAGCATGC TCGACGGGCT CGTCTCGCTC GCGCGGCGTC TCGGTGTCGA GCTGGTGGCC
GAGGGCGTCC AAGACGCCAG CACCGCCGCG CGTCTCCTGG AGCTTGGCGT GCCGAAGGCG
CAGGGGTTCT ACTTCTTTCG TCCGCTCAGT CCGGGCGGCC TTGCACGAGT GCTCCGTCAG
CGCCGACGTG CCCTTCGCTA G
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| Protein sequence | MTRPELPAPP SPGERQGELY GAISRVLAAP SSPHGVLDQL LGVLSAALGV PCAVLGVHQG
FSRLRVVRGP TAMGGLVGLE WAALAAVADG TVVEVGVDAA SFWVLALGER LFLAGAAEGV
DPAGLALVER LAPAVRIAAA SFMADHERRR ADRLRRALRI GERVSDQSRE DRLRLLGRAG
ASVLGASQVV VSEVAGRSLV VRAAAGTGDF GLLEELDVGA GVAGWVLRNQ LSVLVGSAEA
GVGVPSEAVR AIRGVVSAES ALVVPLVGAD GPVGVLAALD AVPYRFDVGD VLALERLARL
VALWDVRDRG RLLGAHLGAE EHLPLANSLG MSIVLETEQR RIEIATAAAR DPEWVIDLGL
DRCLVVAGSA AVRRAATDAL RESADRDPLT GVWHRQAFLA RASERLEAEG PRSGAYVLLI
DLDQLWDVNE REGIAAGDRY LVRAVTGVLE ALGPEAVVGR IGGDEFAALI VGTTSSRDFG
TIRRDMLEVL GARGVAVSLG AASIQDGDVL AAVQRAERDL VADLERRGVA RVERVTAPLE
PADIALAPEL VRALEGDREA GTFGVVFQPV VELATGQIAG VEALARWEHP RLGTVLPGRF
LPIAVHLRLV ERVDELVRAL ALRQVVELER TGVARGLRVS FNLSAESARR RGIASRLIEL
VERSGIAANQ VVVELTESEI AASALEQLRR TLEALAGAGI KVALDDFGVG TSSFRHLATL
AVHEVKIDRS FVANVGTKNG SSMLDGLVSL ARRLGVELVA EGVQDASTAA RLLELGVPKA
QGFYFFRPLS PGGLARVLRQ RRRALR
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