Gene Afer_1460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1460 
Symbol 
ID8323543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand
Start bp1528357 
End bp1530657 
Gene Length2301 bp 
Protein Length766 aa 
Translation table11 
GC content70% 
IMG OID644952591 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_003110056 
Protein GI256372232 
COG category[R] General function prediction only 
COG ID[COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.801207 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTACGA CGGCCTCGAA CTCCATCGCC GCACGCTTTG GCGCGCTCGC GCGCCACGCC 
GTGGCCGACA CGCCGTCACG TTCCGAGGAC GTCCACCTCG ACCGTGACGT GATCGCGGCC
ATGCTCGGCC TGGAGGATGA GCCGGAAGCG CTGGTTGCAA CCGTTCGACT CGAGGGCCAC
ACTGCACGTT TCGCAACGCC TCGCACCCCG CTCCCCCCGC GTCTCAGCCG CCTCCTCGCC
GAGAACCCGG GTCAGCTCTA CACGCACCAA GCCGCCGTCA CCGACCACGC CCTGGCGGGC
CACCACGTGG TGCTCGCCAC CCCGACCGCG TCCGGCAAGT CCCTCGCATT CCTCGTCCCC
GCCCTCGCTC GCCTCGAGCG CGATCCCGCA GCCACCGTTC TCGCCCTCTA TCCCACGAAA
GCACTCGCGC ACGATCAACT GGCGCGCCTC GTCGAGCTCG AGCGAGCGCT CGGCATCGAC
ATCGCCCCTG CCGTCTATGA CGGCGACACC CCGGCCCCGG AACGCGCTCG CATCAAGGAC
CGATCGCGGT TCGTCGTCAC CAACCCCCAT GGCCTGAACC TCTACCTCGG ATGGCACGAA
GGCTGGGAGC GCATCCTCGC CAACCTGGCA CTCGTCATCG TCGACGAGAC ACACGCCTAC
ACGGGAGCGA CCGGCGGTGC GGTGGGCTGG TTGCTCCGTC GACTCCAGCG TCTCGCCGAG
GCGCACGGTG CGGCACCGGT CTACGTGGGG GCATCCGGGA CCATCGCCAA TCCGGCCGAG
CACTTCGCAC GACTCATCGG CGATGACGTC GTCCTCGTCG ATGACGATGG GTCGGCCCAG
CCGACACGCA CGATCGCCAT CGTGGATGCA ACACGATCTC CCGATCACGC CCCGATCGCT
CAGGCCGCGC TCCTCGTGCG TCGGCTCGTC CGCCACCGCC GCCACGTCAT CGCCTTCTCG
AACTCACGAT CGCACGCCGA GCTGCTCGCG AGACTCGCGA CCGATCGCGC GGTCCGCGTC
GAACCCTACA GGGCAGGGTA CGCGGCCCAA CGGCGGCGGG CACTCGAAGC CGACCTCCGA
GCCGGGCGCC TTCGCGCCAT CTCAGCGACG AGCGCCCTCG AACTCGGCAT CGACGTCGGC
GTCATCGACA CGGTCGTGCT CAACGGATTC CCGGGCTCGA TCGCCTCCCT CTTCCAACGC
ATCGGTCGAG CCGGACGATC GGGCCAGGAC GCACTGGGCG TCGTCGTGCT GGGGGCCGAA
CCCGCCGCCC GAGCGCTCAT CGCCGATCCA GAGGAGTTCC TCGTCCGCCC GCCCGAGCTC
GCGGTCGCCA ACGTCGACCA GCCCTCCGTG GTCCGGCGTG CGCTCGAGCT CGCTGCGGCC
GAACGACCCG TCACCCCCGA CGAACTCCGT CACTGGGGCG CGCCCGCACG CGACGCTGCC
GCCGCACTCG TCGAGGCTGG CACGATTCGG CACGACGCCG ACGGCCTTCG AGTCCCGGGC
CGCCGCCCGC ATCGCTTCCG ACCACTGGTC GAGATGGAGC CGACGTGGCG CCTCCAGTTC
GAGGGGACGC GCACCACCAT CGCGCCAGAG AGCCTGTCGG AGAGTCAGGC ACTGCGCGAG
GCCTATCGCG GTGCCATCGT GCTGCATGGC TCGCAGCCCT ACCGCGTCGT CCGGGTCGAC
TACGCTGCGC GCGTCGCGGT CGCACGACCA GAACCCGACC GAGGCCACCA CACCCAAGCA
GCCTGGTATC GCGCGATCGC TCCGACGCGC GTACGGTCTC ATGCGATCGC GGGGTCGCTC
ACGTTGGACC TGGCCGATGC CGTGCTCGTC GAGCAGGTCA CCTCAGCCAA GGAGTTCCGG
GGATCAGTGC TCGTCCACCA ACGCAAGGTC ACTGCCCCCT CACGTTCGGT CGCGGGCGAG
GCCTTGATCC TCTCGACCAA CCAACTCGTC GATCCCGCCG AACTTCCAGC CCTCCACGGC
GTCGAGCACC TCCTCGTCAA GGCGCTCGCG CCGCTTGCCG TCGGCGCAAG CGATCTCACC
ACGCTGACCC AGGCCACGCC GGCACCGCAG ATCCTCTTCT TCGCGCCCGA TGCGCTGGGC
GGCGGCACGA TGCTTGCGAC GGTGGCTCGC CAGCTCGATC GTGCGCTCGC CGTGTCCGAG
CGCATCCTCA CGACGTGCCG CTGCAACGAT GGCTGCCCCT TCTGCACCCT GGACGCTCGC
TGCGACGGCG ACGTTGCCGC CAAGTCGCTC GTCCTGGACG TGCTCGTGCG CCTGCGCGAC
CACCACGCGC GGCACGCTTA G
 
Protein sequence
MSTTASNSIA ARFGALARHA VADTPSRSED VHLDRDVIAA MLGLEDEPEA LVATVRLEGH 
TARFATPRTP LPPRLSRLLA ENPGQLYTHQ AAVTDHALAG HHVVLATPTA SGKSLAFLVP
ALARLERDPA ATVLALYPTK ALAHDQLARL VELERALGID IAPAVYDGDT PAPERARIKD
RSRFVVTNPH GLNLYLGWHE GWERILANLA LVIVDETHAY TGATGGAVGW LLRRLQRLAE
AHGAAPVYVG ASGTIANPAE HFARLIGDDV VLVDDDGSAQ PTRTIAIVDA TRSPDHAPIA
QAALLVRRLV RHRRHVIAFS NSRSHAELLA RLATDRAVRV EPYRAGYAAQ RRRALEADLR
AGRLRAISAT SALELGIDVG VIDTVVLNGF PGSIASLFQR IGRAGRSGQD ALGVVVLGAE
PAARALIADP EEFLVRPPEL AVANVDQPSV VRRALELAAA ERPVTPDELR HWGAPARDAA
AALVEAGTIR HDADGLRVPG RRPHRFRPLV EMEPTWRLQF EGTRTTIAPE SLSESQALRE
AYRGAIVLHG SQPYRVVRVD YAARVAVARP EPDRGHHTQA AWYRAIAPTR VRSHAIAGSL
TLDLADAVLV EQVTSAKEFR GSVLVHQRKV TAPSRSVAGE ALILSTNQLV DPAELPALHG
VEHLLVKALA PLAVGASDLT TLTQATPAPQ ILFFAPDALG GGTMLATVAR QLDRALAVSE
RILTTCRCND GCPFCTLDAR CDGDVAAKSL VLDVLVRLRD HHARHA