Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_1460 |
Symbol | |
ID | 8323543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | + |
Start bp | 1528357 |
End bp | 1530657 |
Gene Length | 2301 bp |
Protein Length | 766 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644952591 |
Product | DEAD/DEAH box helicase domain protein |
Protein accession | YP_003110056 |
Protein GI | 256372232 |
COG category | [R] General function prediction only |
COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.801207 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGTACGA CGGCCTCGAA CTCCATCGCC GCACGCTTTG GCGCGCTCGC GCGCCACGCC GTGGCCGACA CGCCGTCACG TTCCGAGGAC GTCCACCTCG ACCGTGACGT GATCGCGGCC ATGCTCGGCC TGGAGGATGA GCCGGAAGCG CTGGTTGCAA CCGTTCGACT CGAGGGCCAC ACTGCACGTT TCGCAACGCC TCGCACCCCG CTCCCCCCGC GTCTCAGCCG CCTCCTCGCC GAGAACCCGG GTCAGCTCTA CACGCACCAA GCCGCCGTCA CCGACCACGC CCTGGCGGGC CACCACGTGG TGCTCGCCAC CCCGACCGCG TCCGGCAAGT CCCTCGCATT CCTCGTCCCC GCCCTCGCTC GCCTCGAGCG CGATCCCGCA GCCACCGTTC TCGCCCTCTA TCCCACGAAA GCACTCGCGC ACGATCAACT GGCGCGCCTC GTCGAGCTCG AGCGAGCGCT CGGCATCGAC ATCGCCCCTG CCGTCTATGA CGGCGACACC CCGGCCCCGG AACGCGCTCG CATCAAGGAC CGATCGCGGT TCGTCGTCAC CAACCCCCAT GGCCTGAACC TCTACCTCGG ATGGCACGAA GGCTGGGAGC GCATCCTCGC CAACCTGGCA CTCGTCATCG TCGACGAGAC ACACGCCTAC ACGGGAGCGA CCGGCGGTGC GGTGGGCTGG TTGCTCCGTC GACTCCAGCG TCTCGCCGAG GCGCACGGTG CGGCACCGGT CTACGTGGGG GCATCCGGGA CCATCGCCAA TCCGGCCGAG CACTTCGCAC GACTCATCGG CGATGACGTC GTCCTCGTCG ATGACGATGG GTCGGCCCAG CCGACACGCA CGATCGCCAT CGTGGATGCA ACACGATCTC CCGATCACGC CCCGATCGCT CAGGCCGCGC TCCTCGTGCG TCGGCTCGTC CGCCACCGCC GCCACGTCAT CGCCTTCTCG AACTCACGAT CGCACGCCGA GCTGCTCGCG AGACTCGCGA CCGATCGCGC GGTCCGCGTC GAACCCTACA GGGCAGGGTA CGCGGCCCAA CGGCGGCGGG CACTCGAAGC CGACCTCCGA GCCGGGCGCC TTCGCGCCAT CTCAGCGACG AGCGCCCTCG AACTCGGCAT CGACGTCGGC GTCATCGACA CGGTCGTGCT CAACGGATTC CCGGGCTCGA TCGCCTCCCT CTTCCAACGC ATCGGTCGAG CCGGACGATC GGGCCAGGAC GCACTGGGCG TCGTCGTGCT GGGGGCCGAA CCCGCCGCCC GAGCGCTCAT CGCCGATCCA GAGGAGTTCC TCGTCCGCCC GCCCGAGCTC GCGGTCGCCA ACGTCGACCA GCCCTCCGTG GTCCGGCGTG CGCTCGAGCT CGCTGCGGCC GAACGACCCG TCACCCCCGA CGAACTCCGT CACTGGGGCG CGCCCGCACG CGACGCTGCC GCCGCACTCG TCGAGGCTGG CACGATTCGG CACGACGCCG ACGGCCTTCG AGTCCCGGGC CGCCGCCCGC ATCGCTTCCG ACCACTGGTC GAGATGGAGC CGACGTGGCG CCTCCAGTTC GAGGGGACGC GCACCACCAT CGCGCCAGAG AGCCTGTCGG AGAGTCAGGC ACTGCGCGAG GCCTATCGCG GTGCCATCGT GCTGCATGGC TCGCAGCCCT ACCGCGTCGT CCGGGTCGAC TACGCTGCGC GCGTCGCGGT CGCACGACCA GAACCCGACC GAGGCCACCA CACCCAAGCA GCCTGGTATC GCGCGATCGC TCCGACGCGC GTACGGTCTC ATGCGATCGC GGGGTCGCTC ACGTTGGACC TGGCCGATGC CGTGCTCGTC GAGCAGGTCA CCTCAGCCAA GGAGTTCCGG GGATCAGTGC TCGTCCACCA ACGCAAGGTC ACTGCCCCCT CACGTTCGGT CGCGGGCGAG GCCTTGATCC TCTCGACCAA CCAACTCGTC GATCCCGCCG AACTTCCAGC CCTCCACGGC GTCGAGCACC TCCTCGTCAA GGCGCTCGCG CCGCTTGCCG TCGGCGCAAG CGATCTCACC ACGCTGACCC AGGCCACGCC GGCACCGCAG ATCCTCTTCT TCGCGCCCGA TGCGCTGGGC GGCGGCACGA TGCTTGCGAC GGTGGCTCGC CAGCTCGATC GTGCGCTCGC CGTGTCCGAG CGCATCCTCA CGACGTGCCG CTGCAACGAT GGCTGCCCCT TCTGCACCCT GGACGCTCGC TGCGACGGCG ACGTTGCCGC CAAGTCGCTC GTCCTGGACG TGCTCGTGCG CCTGCGCGAC CACCACGCGC GGCACGCTTA G
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Protein sequence | MSTTASNSIA ARFGALARHA VADTPSRSED VHLDRDVIAA MLGLEDEPEA LVATVRLEGH TARFATPRTP LPPRLSRLLA ENPGQLYTHQ AAVTDHALAG HHVVLATPTA SGKSLAFLVP ALARLERDPA ATVLALYPTK ALAHDQLARL VELERALGID IAPAVYDGDT PAPERARIKD RSRFVVTNPH GLNLYLGWHE GWERILANLA LVIVDETHAY TGATGGAVGW LLRRLQRLAE AHGAAPVYVG ASGTIANPAE HFARLIGDDV VLVDDDGSAQ PTRTIAIVDA TRSPDHAPIA QAALLVRRLV RHRRHVIAFS NSRSHAELLA RLATDRAVRV EPYRAGYAAQ RRRALEADLR AGRLRAISAT SALELGIDVG VIDTVVLNGF PGSIASLFQR IGRAGRSGQD ALGVVVLGAE PAARALIADP EEFLVRPPEL AVANVDQPSV VRRALELAAA ERPVTPDELR HWGAPARDAA AALVEAGTIR HDADGLRVPG RRPHRFRPLV EMEPTWRLQF EGTRTTIAPE SLSESQALRE AYRGAIVLHG SQPYRVVRVD YAARVAVARP EPDRGHHTQA AWYRAIAPTR VRSHAIAGSL TLDLADAVLV EQVTSAKEFR GSVLVHQRKV TAPSRSVAGE ALILSTNQLV DPAELPALHG VEHLLVKALA PLAVGASDLT TLTQATPAPQ ILFFAPDALG GGTMLATVAR QLDRALAVSE RILTTCRCND GCPFCTLDAR CDGDVAAKSL VLDVLVRLRD HHARHA
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