| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1385 |
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| Symbol | |
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| ID | 8323466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 1439915 |
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| End bp | 1442722 |
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| Gene Length | 2808 bp |
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| Protein Length | 935 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644952517 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003109984 |
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| Protein GI | 256372160 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTGCGC TGTGGGGATT TCGGCGCGGG CAGGTGTGGT ACATGCCAGA GCGACGTTCG
TACGGTGCCT GGGTGGTCGG CGGTCTCGGC GACCGTCGGA TCCCGCGGAG GCGGTTCATC
GCCGACACCC GACGACGCAC GACCCTCACC GAGCTCATCG ATCTCGGTGA GGAGGATTGG
AGGCTCGTCG AGCGCTACCG TGATCTGTTG GCGTCCGAGG CTCCGGCACT CGCTGCGGCT
TTCTACGACC TCGTGCTCGC GCATCCCGAG ACCCGTGCGG TCTTCGCGGG CTTCTCGGTG
CCGACCATCC AGCGTCTCAT CGACCTCCAG GCCCAACACG CGACCCAGCT TCTCGATCGT
CGCTTCGATG AGGCCTGGCG CCGAGGCACC GAGGAGCTGG GCCGACGACA CTTCACGTGG
CACGTCGATC CGGCGTGGTT GGCCGCCGGC TACGTCGTCT ACTGGCAGCA CTGGGGCACG
CTCGTCGAAC ACCAGGTGCC CATCGCCGAT CGCGTCCCCC TCCTCGACGC GTTGGCACGC
ATCGTCATCG CCGATCTGAT GCTCCAGCTC GAGGGCTTCG CGCGCGCGGC CAAGGCGACG
GTTCGAGATC GTGTGGCCGT CTTCGACGCG CTCGTGGAGG CCGCGGCTCG TGTCGGGAGC
GCGAATGCGA TCGACCAGAC GAATTCGCTG GTCGGTGCGA TGCTCGAAAC GTTGTGTCGA
CTCGTGTCTG AGCGCTCGAG GGAGATCGTG CTCGTGGCCT ATGTGCTGCG TGATCCGGCG
AGCGGGCACT GGACGCTGGC TGCCGCGGGA GGGGGGCTCG CTGCGGCACT ACGACGCGAG
CTACCGACGA CCGTCGTCGA CGCGCCCCTC GAGTCGGTGC TCGAGGGGCG CCGGTCGTCT
GAGCCGATCG TGCTCGACGT GGGCGATCGC CTCGTACCGC GCTGGGACAG CGTCCGGAAC
CTTCCGTTCG GCGAGGTGGT GCTCGTCCCC TTTGCGGCGG GTCCGGCCCG CGGTCTCGGT
GTCGTGGTCA CGGCGTCGGG CTTTGCGCGC CGCGTCGGAC TCGACTACTT CGAACCGCTC
CAAGAGGCAG GTGTACTCGC GTTGAACTTG CTGCACGTCG CCGAGCGAGA TCTGCTCACC
GGACTCGCGA ACCGCAGCGT GCTGACGCCT CGCCTCGAGA CGCTGTGTCG GTCATCGCGA
TCCACCGAGG ACCCGGTTGC GGTCGCCTTG CTCGATCTCG ATCGCTTCAA GGAGGTGAAC
GACCTCGTCG GACACGAGAC GGGCGATCGG GTCCTGCGAG TGGTGGCGCA CGCGCTCGCA
GGGGTCGCGC GCGAGGGTGA CCTCGTCGTG CGGATGGGTG GCGACGAGTT CGCGCTGGTG
CTGCCGGGGC GATCGGGTCG GGCATCGCTC GCGGCGGAGG CGGAGCGCTG GATCGGTGCG
ATCCGTGACC TCGACTGGGA TCGTCTCGGG GTGCCCCAGC TGAGCGGGAG CGTCGGGATC
ACGAGCTTCC CAGCCGACCG GGCTACGGTC GAGGGGCTGG TGCGTCATGC AGAGCTCGCG
CTCTACGACG CGAAGGCCCA CGGTGGTGAT CGAGCTTCGG TGTTCGTTCC GGCGATGGAG
GTGGCGGCTC GGCGTGCCGA CGAGGCCCGC ACCATGGTGG TCGTCGCGCT CGAGCGCGGA
CGGGTCTCAC TCGACTACCA GCCCATCGTG AGCGCCGATG GGGCGGTGGA GGCGATGGAG
GCGCTCATCC GTATCGACGA CCCCGACCGT GGACGTATCG GGCCGGCGGT CTTCGGAGCG
GCGCTCGATC ATCCGGCGCT GGCGCGTCGT GTCGGTCGGT GGGTGCTCGA GGAGGCCCTC
GCGCAGCTCG CCACGTGGCA CGAGTCCGGG TTCACCTTCG GGGTCTCGGT GAACATCTCG
CCGCAGCACC TGCTCGATCC TCGCTTCGTC GACGATGTGG CGAGCGCGCT CGAGCGCCTT
GGTCCGGTGC CGACGAGGCT CGTCGAACTC GAGATCACCG AGACGGCGGC ACTCGGCGAC
ACCCGTGCAG TCGACGACGT CCTCGAGGCG ATCGCCGAAC TCGGACTCAC CATCGCCATC
GACGACTTCG GGGTCGGCCA TGCCTCGCTC CGGTACCTGC GGGAGCTGCC TGCGCAGACG
GTCAAGATCG ACCAGAGCTT CGTGCGCGGC ATGCTGACGT CCGCGGCGGA CTTCGGCATC
GTCGTCTCCA GCGTGCAAGC CGCCCTGTTC CTCGGTCGTC GGATCGTCAT CGAGGGCGTC
GAGGATGCGT ACCTCGAGCG CGTGGCACGC TCCCTCGGCG AGGTGAGTCT CCAGGGCTTC
CATCTCGCCA GGCCGATGCC GGCCGAGGCC GTTGCCCGAT GGCTCGACCT CGAGGGGTCA
CGGTGGCACG ACCGCCCGCG AGCAGAGGAC CCGCTCTTCC AGCGCGCTGG GCTCGGTCCG
CTGCTCAGCG TCCACCACGC GCTGATGGGT CGCCTCGAGG CCGCCGTCGT CGACGAGCGC
GACGACGAGG GCGCGACGTG GATGGCCGCG AGCCTCGACG ACTGCCACCT GGGTCGGTGG
TTGGCTAGCG ATGCTAAGCG ACTGATCGGT GACGAGGGTG CGCGCTCGCT CCTCCGCCAG
GTGCACGAAG AGCTCCACAC CCGCCTCGTG GCGATCGAGC GACGGCGCTC GAGTCTCGAG
CCGGCGACAC TCGATCGGTT GTGGCAGGAG GCTCGAGCCG TCGACGAGCG CTTCGTCGCG
ACCCTCCGTA GCGCGCTCCG GGCGAGCCTC GCAGATCTCG GCAGTTAG
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| Protein sequence | MSALWGFRRG QVWYMPERRS YGAWVVGGLG DRRIPRRRFI ADTRRRTTLT ELIDLGEEDW
RLVERYRDLL ASEAPALAAA FYDLVLAHPE TRAVFAGFSV PTIQRLIDLQ AQHATQLLDR
RFDEAWRRGT EELGRRHFTW HVDPAWLAAG YVVYWQHWGT LVEHQVPIAD RVPLLDALAR
IVIADLMLQL EGFARAAKAT VRDRVAVFDA LVEAAARVGS ANAIDQTNSL VGAMLETLCR
LVSERSREIV LVAYVLRDPA SGHWTLAAAG GGLAAALRRE LPTTVVDAPL ESVLEGRRSS
EPIVLDVGDR LVPRWDSVRN LPFGEVVLVP FAAGPARGLG VVVTASGFAR RVGLDYFEPL
QEAGVLALNL LHVAERDLLT GLANRSVLTP RLETLCRSSR STEDPVAVAL LDLDRFKEVN
DLVGHETGDR VLRVVAHALA GVAREGDLVV RMGGDEFALV LPGRSGRASL AAEAERWIGA
IRDLDWDRLG VPQLSGSVGI TSFPADRATV EGLVRHAELA LYDAKAHGGD RASVFVPAME
VAARRADEAR TMVVVALERG RVSLDYQPIV SADGAVEAME ALIRIDDPDR GRIGPAVFGA
ALDHPALARR VGRWVLEEAL AQLATWHESG FTFGVSVNIS PQHLLDPRFV DDVASALERL
GPVPTRLVEL EITETAALGD TRAVDDVLEA IAELGLTIAI DDFGVGHASL RYLRELPAQT
VKIDQSFVRG MLTSAADFGI VVSSVQAALF LGRRIVIEGV EDAYLERVAR SLGEVSLQGF
HLARPMPAEA VARWLDLEGS RWHDRPRAED PLFQRAGLGP LLSVHHALMG RLEAAVVDER
DDEGATWMAA SLDDCHLGRW LASDAKRLIG DEGARSLLRQ VHEELHTRLV AIERRRSSLE
PATLDRLWQE ARAVDERFVA TLRSALRASL ADLGS
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