| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1380 |
|---|
| Symbol | |
|---|
| ID | 8323461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 1434355 |
|---|
| End bp | 1435503 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644952512 |
|---|
| Product | ABC polyamine/opine/phosphonate transporter, periplasmic ligand binding protein |
|---|
| Protein accession | YP_003109979 |
|---|
| Protein GI | 256372155 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAA GCAAGCTCAC GACGCCCCGG CTCTTCGCCG GCGTCGCTGC GGCCAGCGCC
CTGCTCGCCG CCTGCGGAAG CGCGACGACC GCGTCGACCA CCTCCGCCCA GACCTCATCG
CCCGCCTGCT GGGCAACCGC GACCACGATT CAAGCGTGCG GCGGCATGAA CGCCCTCATC
AAGGCCGCCC GCGCCGAAGG GCACCTGAAC GCGATCGCCC TGCCGTCGAA CTGGGCCAAC
TACGGCTCGA TCATCGCCGC CTTCGAGAAG CGCTACGGCA TCACCGTGAA CGTCGCCAAT
CCCGAAGGAT CGAGCGGCGA GGAGCTCGCG GCGCTGAAGA CGGAGAAGGG GACCGCGAAG
GAGCCCGACG TCGTCGATGT CGGATTGTCG TTCGCCCTCC AGGGCCAACA GGAGCATCTC
TTCGCACCCT TCAAGGTGCC CACCTGGTCC GAGATCCCGG CCAATCAGAA GGCAGCGAAC
GGCGACTGGT TCGAGGACTA CGGCGGCCTG ATCGCGGTTG GCTACAACGC AGGTGCCGTC
CCTCGCCCGA CCTCGCTCGC CTCGCTCACG CAGCCTGCCT ACAAGGGCAG CGTCTGCCTC
GACGGCAACC CTGAGAGCGC AGGCGCCGCC TTCTCGGGCG TCTTCGCTGC GGCCCTCGCG
AACGGGGGCT CCTATGCCAA CATCGCACCG GGCATCGCGT ACTTCCAGCG TCTGCACCAA
GCCGGCACCT TCGTGCCCAC CGGCGCCACC GCCGCCAGCA TCGAGGCCGG CCAGTGCCGC
GTGACCCTCG ACTGGACCTA CCTCCAGGCG CAGTACGCCA GCCAGCTGGC CGGCAAGGTC
ACCTGGAAGT CGTTCATCCC CTCGAACGCC CACGTCGCTG CCTACTACGT GCAGGCGATC
TCGGCCAACG CGCCCGATCC AGCGGCAGCG CGCCTGTGGG AGACCTACCT CTACTCTCCC
GCTGGCCAGA ACGGCTGGCT CGAGGGCTAT GCCTACCCGG TCGAGCTCAA GGCCATGATC
GCCAACGGCA CGGTCAACCG CGCAGCGCTC GCCAAGCTGC CGCCGCTCCC CTCGAATCTT
GCGTTCCCAA CGGCGAGCGA ACTCGCCTCG GCCGCAAAGA CGGTGGTCGC CGAGTGGCCA
ACGGTCTAG
|
|---|
| Protein sequence | MTRSKLTTPR LFAGVAAASA LLAACGSATT ASTTSAQTSS PACWATATTI QACGGMNALI
KAARAEGHLN AIALPSNWAN YGSIIAAFEK RYGITVNVAN PEGSSGEELA ALKTEKGTAK
EPDVVDVGLS FALQGQQEHL FAPFKVPTWS EIPANQKAAN GDWFEDYGGL IAVGYNAGAV
PRPTSLASLT QPAYKGSVCL DGNPESAGAA FSGVFAAALA NGGSYANIAP GIAYFQRLHQ
AGTFVPTGAT AASIEAGQCR VTLDWTYLQA QYASQLAGKV TWKSFIPSNA HVAAYYVQAI
SANAPDPAAA RLWETYLYSP AGQNGWLEGY AYPVELKAMI ANGTVNRAAL AKLPPLPSNL
AFPTASELAS AAKTVVAEWP TV
|
|---|
| |