Gene Afer_1349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1349 
Symbol 
ID8323430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand+ 
Start bp1405015 
End bp1406049 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content70% 
IMG OID644952481 
Producthydroxymethylbutenyl pyrophosphate reductase 
Protein accessionYP_003109948 
Protein GI256372124 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGTCG ACAAGGTCCT GCTCGCCGCT CCTCGTGGTT TTTGTGCCGG GGTCGAGCGG 
GCCATCGGCG CCCTCGGCTG GATGCTGCGC ATCTTCGAAC CGCCCGTGTA CTGCTACCAC 
GAGATCGTGC ACAACCGCCT CGTGGTCGAG GCGTTCGAAG CAGCAGGCGT CGTCTTCGTC 
GACGACGTCG AGAGCGTCCC CCCTGGTCGC CCGGTCATGC TGTCTGCCCA CGGGACCGCC 
CCCGAGGTCC TCGAGGCGGC GCGCCAACGC TGTCCCATCG TCGTCGATGC CGTCTGTCCG 
CTCGTCACGA AGGTCCACCA CGAGATCCGA ACGCGAGCCC AGCGCGGCTA CCAGATCGTC 
TACGTCGGTC ATCGTGGCCA CGAGGAGGCC ATCGGCGCCA CCGCCGAAGC TCCCGAAGCC 
GTCACCTTCG TCGAGACGCC AGAGGAGGCT CGCGCCATCA CCCTCGGCGA CGGGCCGGTC 
GCGCTGCTCG CCCAGACCAC GCTCGCCGTG CCCGAATGGG AGGCGATCGC CGCCATCGTC 
GCCAGCCAGA CGCCCAACCT CTGGCAGCCG GGCCGCTCCG ACCTGTGCTA CGCCACCACG 
AACCGACAGG CGGCCGTTCG GGCGCTTGCA GAGCGTGTCG ACGCCATGGT CGTGGTCGGA 
TCTGCGAACT CCTCGAACAC CCGCGCTCTC GAGCGCGTCG CCACGAGCGC CGGCGTGGGC 
CACGTCGAGC GCGTCAACCG CCCGAGCGAG CTCGTCGGCC CGTTCGAGGG CATCGTGGGC 
GTCACCGCCG GGGCATCGGC TGCGGAGTCC GTCGTCAAAG ATGTGGTGGC CGCACTCGCG 
CCGCGGCTGG GCGTCGAGGA GATCAGCGTC CTCGAGGAGG ACGAGTTCTT CCCACTCCCT 
CCCGATCTGC GCGACCTCAT CGGTGCGCTC GCGGGCGTCG TCGCGGTTGC AACAGGCGTC 
TCCCCAGAGG GCGCACTGCC CGAGCGAGAG TCCGCCGAGG CGATACTCGC CGCACTCGAC 
ACTCGCCACC GCTAG
 
Protein sequence
MAVDKVLLAA PRGFCAGVER AIGALGWMLR IFEPPVYCYH EIVHNRLVVE AFEAAGVVFV 
DDVESVPPGR PVMLSAHGTA PEVLEAARQR CPIVVDAVCP LVTKVHHEIR TRAQRGYQIV 
YVGHRGHEEA IGATAEAPEA VTFVETPEEA RAITLGDGPV ALLAQTTLAV PEWEAIAAIV 
ASQTPNLWQP GRSDLCYATT NRQAAVRALA ERVDAMVVVG SANSSNTRAL ERVATSAGVG 
HVERVNRPSE LVGPFEGIVG VTAGASAAES VVKDVVAALA PRLGVEEISV LEEDEFFPLP 
PDLRDLIGAL AGVVAVATGV SPEGALPERE SAEAILAALD TRHR