Gene Afer_1324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1324 
Symbol 
ID8323403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp1377379 
End bp1378044 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content68% 
IMG OID644952454 
Productpeptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
Protein accessionYP_003109923 
Protein GI256372099 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2173] D-alanyl-D-alanine dipeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.557564 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTCG TGCCACCTGG TGTGGTCTTG ATCGGCGACC AGGCGGTGCA GCAAGTTCCC 
GTCAGTGAGT GCGGCGAGCC GCTGGTGGAC CTCGGCGAGC GCGATCTCAT CGTGATCGAC 
GATCGGCTCG ACGATGGGAC CGGCAACCAT CGGTTCGTGC GCGAGGGATT GGCGGAGCGC 
CTGGTGCGTG CGGCGCGTGC ACTGCCCGAG GGACTGCGCC TCGCGGTCGT CGAAGGCTTC 
CGGTCCCGCG AGCTGCAGCG GCGCTACTTC GAGGAGTACT ACGCAGAGCT CCTGGAGGCG 
AATCGGGGAG CAGATCCCGA GCGGACTCGT CTGCTGGCGA GCCGCTATGT AGCGCCTCCG 
GACGGATTCC CGCCGCATTG CTGCGGGGCG GCTGTCGACC TGACGCTCGT CGGAGCCGAC 
GGCGCGGAAG TGGACATGGG ATCGGCGGTG AACGCGAGTC CGGAGGAGAG CGCAGGTCGA 
TGCTTCTTCG ACGCCGAGAC CATTGGCCGA GAGGCACGAC GCATGCGGAG CGTGCTGCGC 
TCGGTGCTCG TGGCGGTGGG GCTCGTCAAC TACCCGACGG AGTGGTGGCA CTGGTCGTGG 
GGGGATCAGT ACTGGGGACT CATGACCGGT GCGGGTGAGG CTCGCTACGG CGTGATCGAC 
CGCTGA
 
Protein sequence
MSLVPPGVVL IGDQAVQQVP VSECGEPLVD LGERDLIVID DRLDDGTGNH RFVREGLAER 
LVRAARALPE GLRLAVVEGF RSRELQRRYF EEYYAELLEA NRGADPERTR LLASRYVAPP 
DGFPPHCCGA AVDLTLVGAD GAEVDMGSAV NASPEESAGR CFFDAETIGR EARRMRSVLR 
SVLVAVGLVN YPTEWWHWSW GDQYWGLMTG AGEARYGVID R