Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_1235 |
Symbol | |
ID | 8323309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | - |
Start bp | 1291824 |
End bp | 1292660 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644952365 |
Product | apurinic endonuclease Apn1 |
Protein accession | YP_003109839 |
Protein GI | 256372015 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCGCGTCG GCTGTCACGT GTCGGCCGCT GGCGGTGTGC TCAAGATGCT CGAACGCGCC GGAGAGCGAG GCGCGAGCGT TGCGCAGTGC TTCTTGGGCT CCCCTCGATC GTGGCGGTGG TCCGTCGGCG TGGCGCCCGA GCCTGATGTG GTGCGCGAGG CGGCGCAGCG AGCCGGCGTC GAACGGATCG TGGTCCACGC GTCGTATCTG ATCAACCTCG CCTCCGTCGA CGCGAAGCTG CGCGATCGAT CGCTGGCGTT GCTTCGCCAG ACCGCGATCG CTGCCGAAGG CATCGGCGCC GAGTCGGTGG TCGTCCACGC CGGCTCCGCG CCTGGTGACG ACCCTGATGC AGCGCGCCAG CGGATCCGGG AGGGGCTCGA GCGCGTGCTC GAGGCGACGT CGACGATTCG CATTCTCGTG GAGAACCCGG CGACGGGTTC GGTGGCGTCC GGTCCGGCCG AGCTGGGGGC CCTGGCTGGG GCCCTCCGGA CGAAGCGGGT GGGGGTGTGT CTCGACACCC AGCACCTGTT CGCCGTCGGC TGGGCCATCG ACGAAGCCGC GGGGCGCGAG GAGATCGTCA CGGCGCTCCA GGCGGCACAG GTGCCCGTGG CGCTGTGGCA CTGCAACGAT TCGGCCAGTG AGCGTGGTCG AGGGCGCGAC CGTCACGCGA ACATCGGCGA GGGGGCGATC GGAGCCGAGG CGCTCTGCTC GCTCGTCGCC GATCGGCGCC TGCCGGAGGC CGATGTGGTG CTCGAGGTCC CGGGAGCGGG CGACGGTCCC CGCGCCGAGG ACGTCGCAGC GGTGCGAGCC CTCCTCGTCC GTCACGAGCG ACTATGA
|
Protein sequence | MRVGCHVSAA GGVLKMLERA GERGASVAQC FLGSPRSWRW SVGVAPEPDV VREAAQRAGV ERIVVHASYL INLASVDAKL RDRSLALLRQ TAIAAEGIGA ESVVVHAGSA PGDDPDAARQ RIREGLERVL EATSTIRILV ENPATGSVAS GPAELGALAG ALRTKRVGVC LDTQHLFAVG WAIDEAAGRE EIVTALQAAQ VPVALWHCND SASERGRGRD RHANIGEGAI GAEALCSLVA DRRLPEADVV LEVPGAGDGP RAEDVAAVRA LLVRHERL
|
| |