| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1156 |
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| Symbol | |
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| ID | 8323227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 1206095 |
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| End bp | 1207975 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644952285 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003109762 |
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| Protein GI | 256371938 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.207218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACCCA ACGTCGCCAC CTCTGGGGCA CCGCACGAGC GGACCGCAAC CGCGGTGGTG
CGTCGGAGCA TCGCCGGCCC GCCTGATCGC GAACTCGTTG CGGCGCTGGC GGCGCTCGCA
GACGCGATCG AGGCCATCGA CTCTTCCACC AACCCGGCGC TCGTCGACGC CGCGACCCGC
ATCGGTGCTC GCCTCGACTA CCTCGGTCAT CGGCCGAGCA CCCTCGTGGC CCTCCTCGCC
GCACTGGCGG AGAGCCTTGG TCGTCACACC ACGGCCGACA CCGCGGTGAT GCGAGCCCTC
GCGATCGCGA CGGATGCCCT CTTCGCACGC CGGGAGCGCG AACTCGTTCG TCTCTCCATG
CTCGCAACCC GCGATCCCCT GACGGGGCTC CCGAATCGTC GAGCGTTCGC AGACGCCCTC
CAGCGATCGT GGGCACGCGC GAAGCGTACG GGTGAGCGCG TCACCGTCAT CGCCCTCGAC
CTCGACGACT TCAAGCACGT CAACGACACG TACGGACACC GCCGTGGGGA TGAGGTCATG
GCCGAGTTGG CCCACCGCCT CGCCAAGGCC GTCCGCGCCA CCGACGTGGT CGCTCGCACC
GGCGGGGACG AGTTCGGCCT CGTCCTCGAC CCCACGGGTG AGGAGGCCGC GGTCGAACCG
GTGCTGGCAC GCCTCGAGCG CGAGCTCCAG CGCCCACTCG CAACCCTCGA CGGTGGCCGT
CTCCTCGCCT CGGCGGGCAT CGCCTCGAGC GATGCTCTCA CCATGGAGGC CGATGCGCTC
CTCGACGCTG CCGACCAGGC CCTCTACGTC GCCAAGCATG CTCGCCCGGT CGAGAACGAG
GTGCTGCGCA TCTCCTACTG GCAACGAACG GGCACACCCA CGACAGGGCA CAGGCTCGCC
CCCCCACACC CCTCCGAAGG CATCTCGGTC GTGTATCAAC CCATCATCGA TCTCGCCACA
GGGCGGACCG TTCGCGCCGA AGCGCTCGCC CGGACCGACG CCTCGTCGGC CGTGCACTCC
GTGGAGTCGC TGCTCCAGGC CGCGACGCGA GCCGAGCACG CACGCTTGCA TCGCCACATC
GTGGCACTCG TCCTCGGTGA CCTCGCCGCC CTGGGACCCG ATGCACGGGT CAGCGTCAAC
GTGGACGCGG GCGTCCTCGA CGATCAGGTG CTCACGACCA CGCTGCTCCA CGGACTCGAC
CAGCTCGCAC CTGGGCAACT GCGCATCGAG ATCACCGAGC GCGACATCTT GCTCACTGCT
CATGGAGACG TCGTTCGGCG CCTCCGCGAG CACGGTGCGA CCATCTCGCT CGACGACTTC
GGGACCGGCT TTGCGAGTCT GTCGCGCCTG CTCACCATCC CCGTGGACGA GATCAAGCTC
GACCGCAGCG TCGCCGCTGA TCGGCAGATG GGATCGGTGG CGAGCGCCGT GCTCGCGATC
GCGGTGGCAC TCGGACGCGC TCTCGACATC GACCTCGTCG TCGAGGGTGC CGACAGCATC
GAGCGTGCCG CGCAGTTCCG CGCGATCGGC GTGCCGCTCG CGCAGGGATT CGCGATCGGC
GAGCCGACCG CGTCGCTCCG CCAGGCACTC GACACCACCA TCGATCTCGA CACGCTCGAT
CGATCCCTCG TCTCGCGGGA CGTCGCCGAT GCGCGGGCGA GCATGTGGGA GCAGGCGATC
GCATGCTTGC TCACCGCCGA GCCCGATGGC GACCTCACCA CCTGTGTCAT CGCCGCCGAC
CTCGACGAGC CCAGACGGCG AGCACACCTG GAGCACCACC GCATCATCGC AGAGATCCTG
GGCCGCGCGG GCGTCATCGA CCTGCGCCGC GGTGCCGAAC GCGTCCCATC GCCATCGTCA
GCGCGGCGAG GACCCTCGTA G
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| Protein sequence | MEPNVATSGA PHERTATAVV RRSIAGPPDR ELVAALAALA DAIEAIDSST NPALVDAATR
IGARLDYLGH RPSTLVALLA ALAESLGRHT TADTAVMRAL AIATDALFAR RERELVRLSM
LATRDPLTGL PNRRAFADAL QRSWARAKRT GERVTVIALD LDDFKHVNDT YGHRRGDEVM
AELAHRLAKA VRATDVVART GGDEFGLVLD PTGEEAAVEP VLARLERELQ RPLATLDGGR
LLASAGIASS DALTMEADAL LDAADQALYV AKHARPVENE VLRISYWQRT GTPTTGHRLA
PPHPSEGISV VYQPIIDLAT GRTVRAEALA RTDASSAVHS VESLLQAATR AEHARLHRHI
VALVLGDLAA LGPDARVSVN VDAGVLDDQV LTTTLLHGLD QLAPGQLRIE ITERDILLTA
HGDVVRRLRE HGATISLDDF GTGFASLSRL LTIPVDEIKL DRSVAADRQM GSVASAVLAI
AVALGRALDI DLVVEGADSI ERAAQFRAIG VPLAQGFAIG EPTASLRQAL DTTIDLDTLD
RSLVSRDVAD ARASMWEQAI ACLLTAEPDG DLTTCVIAAD LDEPRRRAHL EHHRIIAEIL
GRAGVIDLRR GAERVPSPSS ARRGPS
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