Gene Afer_1101 details

Gene Information

• Locus tag: Afer_1101
• ID: 8323171
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: -
• Start bp: 1147145
• End bp: 1150423
• Gene Length: 3279 bp
• Protein Length: 1092 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644952229
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_003109707
• Protein GI: 256371883
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATGGC GGCTGCGGGG ACGGTGGCGT CTCGTCGTCC TCGCCGCCAT CTGGATGCCG 
CTCCTCCTCG CGCTCACCGT CGGGGCCTCG TGGTTGCGGC GTGTGGACGC GTCCAGTGTG 
TCGTCGGAGC GAGCGCTTGC GAACGCCGTT GCACGGGCGT GGGCTCGGCG CGTCGCGGTG 
CGAGCCGACC TCGTCGTCGC CGATCTCGAC ACCGTCGGGA CGGTGCTCAT CGGGCCTCGT 
CCGACGCTCG CGTCGTTGCC GGCGACCATG GTGCCGGTGC TCGAGGCCTT CGTCGCCCGT 
CAATCAGCCA TCGAGGGGAT CGCGGTCGTG GCCCCGCACG GAGGATCCAT CTGGTGGCGG 
GCCGGGCGTG CGGTCGATCC TGTCGCCGTC GGCGCGTCGG GGACGAGGTT GGTTCGTGTG 
TCCAACGGGT TCGAGATCGC CGTTGCGATC CATGCACGCC GAAGTGCGCA GGTCGACTAC 
CTCGTCGAGG CCCTTGTCGC GCCGGGAACG TTGCAGGTCG CAGCCCCGGC ACAGACCGGC 
GTCAGGGCGG TGAGCCTTGC GATCGGGGGC GTGCGCGTGT TCGATCGTGC CACTGCGGCC 
ACGATGCACG TACAGGTTGC GAGTGCGCTC GGGCCGGTCG AGGTGGAGTT CACTGCCCGA 
ACGAGCGTCC TCGACGCCGC GAGCGGACCC ATGAGCGCAC TCGTGGCTGC CATCGTCGTG 
CTGGTGGGTG CGTCGGCGCT CGTCACGCAG CGCTTCGTGC GAGACTCCGA GCGCTACCAG 
GCCGAACTCG CCTGGCGGGA GGCGCTCGAG CGCGCGCTCG CGGAGCTCGC TGGTGCCGCC 
GAGGGTGCCC AGAGCGTCGG AGCCTTCCTG GAAGCGGCGG CGGGCATCCT CGGCCGCGTG 
CCGGGCGTGC GGGTGCTGCA GGGAAGGGAC GGCGACGGTC TCGAGGTCGT CGCCGACGAT 
CCACGCCGTC GCGCTTGGCT CGCGCCGTTC GAGCCTCGCA TCCGTGGCGC CATCGACCGC 
GAGGTCGCAG AGTTCGCACT CGTGGATCGA CTGCGCCGTG CCGAAGCCGA GGCGAGGTCG 
ATCGCCAGGC GGGATCCACT CACCGGCCTC GCGAACCGGA TGGCGCTCAC CGAGCGGCTC 
GTTCGCCTGA CGAGCGATGC GAGTGTGGGT GCGGTCGTGT GCATGCTCAT CGACCTGGAT 
GACTTCAAGG AGGTGAACGA CTCCTTTGGT CACGTCGTCG GCGATCAGGT CCTCATCGAG 
GCGGCGAGGC GTGTGGCCGG TGAGGTCGCG CGCCGGCTGC CGTCGGCACT GGTGGCACGC 
TTCGGTGGCG ACGAGTTCGT CATCCTCGCA GCGCTTGCGA TGGACGAGGC GGCGGCACGC 
GATCTCGCAC AGCGCATCGG CCGTGCCCTC CGGCGACCCG TGGAGCTCGA GGCCGGCCTT 
GCGGTGACGA TCGGGGCGAG CGTCGGATGG TCCTGGTGGC CGCGGGACGC CGGCGATCTC 
GCGGGGCTGC TCCGCGTGGC CGATGCCACG ATGTACGAGG CGAAGCGCGC CCGGAGTGTC 
CGAGGTGCAG GAGCGAGCGA CGCCCGCAGT GCCATCGTGG ATCCGTGGGG CCCCGAAGCC 
ACGGCGGAGC TCGCGGAGGA CCCTTCGTGG CGGGTCGCGC TCGGAGGCGC GCTCCCCGAC 
GAGGTGCTCG ACGCGCTCGT CGACGGTCCG GCGGCGGCAG CGAGGGCGGT GGCGAGATGG 
GGTGGCGGCG CCGTGGCCGA GCTCGCTGAC GTACCGCCGT CGACCCGCAT CGCCATGGCG 
CGACTCGAGA CCGGTCTCAA CGTCGCCGGT GCTCGCCGTC GGGTGCTGAG GGCCCGCTGG 
TCCGAGGCGC TCGACGGCCT CGACGGTCGA CCGCTCGGGT CGGTCCTCGA GGAGGTCGAC 
GTCGCGGGCG GGCTCGCCGG AGTCCATGGC GCGGCGCTCG TCGAGGTCAC CGGGGCGGGT 
CGGTTGCGCG TTCGAGGAAG CGCTGGGCGC GAGCGAGCCG CGCTCGTCGC CGCGCTGGAG 
GAGCCGTCGG GACCGCTGGC GCGGCGCGTC ATCGGCGTGG ACGAGCAGGT CGTCGGCGAC 
GGGGCGATCG TGTGCCGACG CGAGGACTCG AGCGTCTGGG GGCTCGTGGT CGCGGTCGAG 
GTCGCACCCG ATGCGACAGA ACCCTTGCTC GGTCGGCTCG TCGAGGCGAT CTGCGACCGT 
ATCGCGTTGC TCCGTCGTGG GTATCACTCG ACGCTTGGCC GGCGTGAGAT CCTCACGCGT 
CTGCGTGGTG GAGGCGTACG GCTCGCACTC CAGCCGATTG TTCGCCTCGG CGACGCGAGT 
GTCATCGGGC TCGAAGCGCT CGCACGGCTC GACGATGGCC GAGGTCGACT CTGGTCGCCG 
GCGGAGTTCC TGCCCTTTCT CTCCGCTGCC GAGCTCGGCG AGCTCTTCGA GCGGGTCCTC 
GATGACGCAG TCGGCCTGGC GGCGAACTGC CTGCGCCCCG ACCTCGCGAT CGGGGTCAAC 
GCACCGACCG CGGTGCTCGC CAACCCGAGT TCGGTCGACA CCATCCGCCG GGTCCTCGAG 
CGCTACGCGG TCGCGCCGTG GCGGCTCACG ATCGAGGTCC TGGAGGACTC GACCGGAGCA 
CCCTCATCGC TCGAGGCCAC GCTCGTTGCG CTGGGAGCGC TTGGCGTGCG TCGGGCACTC 
GACGACGTCG GGAGCAGCGG TCAGGGGATC GTCCGGCTCG CGAGCTTGTC GGTGGATCTC 
GTGAAGGTCG CGAGCGACGT GGTCGCTGCC CTCGGTGAGA ATCCCCTGCA GGCCATCGTG 
ACCCTCGATG CCGTGGCGCG CCTTGGCGAG GGCCAGGGGT GCTCGGTCGT GCTCGAGGGC 
ATCGAGACAC GTGCCCAGTT CGAGGTGGCG CGCGCGCTCG GCATCGAGCT CGGACAGGGC 
TACTTCCTCG GTCGCCCGGA ACTGGCACGC GCCGATGCTG CCTGGGTCGA TCCTGGCGTC 
GCCGCCGAGG CCGTCGGGGC GGCCTACACG ACGCTGCCGG GCGCGCTCGC GTGGCACTGG 
CGCCATCGAG GCGGCCACGA GTGCGCAGTC GAGGCCTGTC CGATCACGCC AGCGCTCACG 
GGCGCACTTG CCGCGCTCCA TCTGGTCGTC CACGGTCGCG GCGACGCAGG CTCGCCTACA 
ACGCTCACCG ATGCACTGGT GGCCGCGATT GCGAGTGAAG CGTCGGCCTC TGGCTCAGCC 
GACCTGCGAG GGTACGCGGT CGTGGACGGC GGCCGGTAG 

 

Protein sequence

MTWRLRGRWR LVVLAAIWMP LLLALTVGAS WLRRVDASSV SSERALANAV ARAWARRVAV 
RADLVVADLD TVGTVLIGPR PTLASLPATM VPVLEAFVAR QSAIEGIAVV APHGGSIWWR 
AGRAVDPVAV GASGTRLVRV SNGFEIAVAI HARRSAQVDY LVEALVAPGT LQVAAPAQTG 
VRAVSLAIGG VRVFDRATAA TMHVQVASAL GPVEVEFTAR TSVLDAASGP MSALVAAIVV 
LVGASALVTQ RFVRDSERYQ AELAWREALE RALAELAGAA EGAQSVGAFL EAAAGILGRV 
PGVRVLQGRD GDGLEVVADD PRRRAWLAPF EPRIRGAIDR EVAEFALVDR LRRAEAEARS 
IARRDPLTGL ANRMALTERL VRLTSDASVG AVVCMLIDLD DFKEVNDSFG HVVGDQVLIE 
AARRVAGEVA RRLPSALVAR FGGDEFVILA ALAMDEAAAR DLAQRIGRAL RRPVELEAGL 
AVTIGASVGW SWWPRDAGDL AGLLRVADAT MYEAKRARSV RGAGASDARS AIVDPWGPEA 
TAELAEDPSW RVALGGALPD EVLDALVDGP AAAARAVARW GGGAVAELAD VPPSTRIAMA 
RLETGLNVAG ARRRVLRARW SEALDGLDGR PLGSVLEEVD VAGGLAGVHG AALVEVTGAG 
RLRVRGSAGR ERAALVAALE EPSGPLARRV IGVDEQVVGD GAIVCRREDS SVWGLVVAVE 
VAPDATEPLL GRLVEAICDR IALLRRGYHS TLGRREILTR LRGGGVRLAL QPIVRLGDAS 
VIGLEALARL DDGRGRLWSP AEFLPFLSAA ELGELFERVL DDAVGLAANC LRPDLAIGVN 
APTAVLANPS SVDTIRRVLE RYAVAPWRLT IEVLEDSTGA PSSLEATLVA LGALGVRRAL 
DDVGSSGQGI VRLASLSVDL VKVASDVVAA LGENPLQAIV TLDAVARLGE GQGCSVVLEG 
IETRAQFEVA RALGIELGQG YFLGRPELAR ADAAWVDPGV AAEAVGAAYT TLPGALAWHW 
RHRGGHECAV EACPITPALT GALAALHLVV HGRGDAGSPT TLTDALVAAI ASEASASGSA 
DLRGYAVVDG GR